Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:6177870-6178123	HepG2	liver:	n/a	chr11:6177999-6178010
2	USF1	chr11:6177777-6178181	K562	blood:	n/a	chr11:6177999-6178010
3	USF1	chr11:6177854-6178101	SK-N-SH_RA	brain:	n/a	chr11:6177999-6178010
4	USF1	chr11:6177850-6178078	SK-N-SH_RA	brain:	n/a	chr11:6177999-6178010
5	USF1	chr11:6177928-6178035	GM12878	blood:	n/a	chr11:6177999-6178010
6	USF1	chr11:6177828-6178180	SK-N-SH	brain:	n/a	chr11:6177999-6178010
7	USF1	chr11:6177828-6178185	ECC-1	luminal epithelium:	n/a	chr11:6177999-6178010
8	USF1	chr11:6177926-6178056	HepG2	liver:	n/a	chr11:6177999-6178010
9	MYC	chr11:6177993-6178042	K562	blood:	n/a	n/a
10	CHD2	chr11:6177962-6178152	H1-hESC	embryonic stem cell:	n/a	n/a
11	USF1	chr11:6177767-6178168	K562	blood:	n/a	chr11:6177999-6178010
12	USF2	chr11:6177892-6178146	Hela-S3	cervix:	n/a	chr11:6177998-6178009
13	USF2	chr11:6177870-6178055	GM12878	blood:	n/a	chr11:6177998-6178009
14	USF2	chr11:6177947-6178027	H1-hESC	embryonic stem cell:	n/a	chr11:6177998-6178009
15	RCOR1	chr11:6178001-6178050	K562	blood:	n/a	n/a
16	USF1	chr11:6177830-6178191	ECC-1	luminal epithelium:	n/a	chr11:6177999-6178010
17	BHLHE40	chr11:6177926-6178141	K562	blood:	n/a	n/a
18	MAX	chr11:6177839-6178144	K562	blood:	n/a	n/a
19	RCOR1	chr11:6177857-6178187	K562	blood:	n/a	n/a
20	USF1	chr11:6177736-6178205	HCT-116	colon:	n/a	chr11:6177999-6178010

Variant related genes	Relation type
OR52B1P	TF binding region

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10839517	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10839519	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11040768	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11500742	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2221718	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs325639	0.81[ASN][1000 genomes]
rs325666	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs325679	0.92[ASN][1000 genomes]
rs4758392	0.81[ASN][1000 genomes]
rs7480133	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv896970	chr11:6173000-6217152	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv523933	chr11:6173346-6204316	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6176800-6178400	Enhancers	HepG2	liver
2	chr11:6177800-6178600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr11:6177800-6178600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:6177800-6179000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:6177800-6179200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:6178000-6178200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:6178000-6178200	Enhancers	Fetal Intestine Small	intestine
8	chr11:6178000-6178400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:6178000-6178400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:6178000-6178400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:6178000-6178400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:6178000-6178800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:6178000-6178800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:6178000-6178800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:6178000-6179000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:6178000-6179200	Enhancers	Spleen	Spleen

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