Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10839517	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10839519	0.81[ASN][1000 genomes]
rs11040768	0.84[AMR][1000 genomes]
rs11040772	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11500742	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11826453	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1381911	1.00[JPT][hapmap]
rs1599692	0.92[ASN][1000 genomes]
rs1903778	0.92[ASN][1000 genomes]
rs2221718	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs325634	0.90[ASN][1000 genomes]
rs325639	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs325640	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs325657	0.85[ASN][1000 genomes]
rs325661	0.94[ASN][1000 genomes]
rs325697	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs34220108	0.83[ASN][1000 genomes]
rs3921908	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4520575	0.92[ASN][1000 genomes]
rs4758078	0.92[ASN][1000 genomes]
rs4758085	0.92[ASN][1000 genomes]
rs4758086	0.86[ASN][1000 genomes]
rs4758380	0.92[ASN][1000 genomes]
rs4758392	0.97[ASN][1000 genomes]
rs6578740	0.92[ASN][1000 genomes]
rs6578743	0.89[ASN][1000 genomes]
rs6578744	0.92[ASN][1000 genomes]
rs7117911	0.92[ASN][1000 genomes]
rs7480133	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7930953	0.86[ASN][1000 genomes]
rs7944650	0.92[ASN][1000 genomes]
rs7948429	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6164000-6165400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:6164600-6165400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr11:6164600-6165400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:6164600-6165400	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:6164600-6165400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:6164800-6165400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr11:6164800-6165400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr11:6164800-6165400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:6164800-6165400	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr11:6164800-6165400	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr11:6164800-6165400	Active TSS	HepG2	liver
12	chr11:6165000-6165400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:6165000-6165400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:6165000-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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