Variant report

Variant	rs4758078
Chromosome Location	chr11:6099891-6099892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11040594	0.81[EUR][1000 genomes]
rs11040648	0.81[EUR][1000 genomes]
rs11040649	0.81[EUR][1000 genomes]
rs11040650	0.81[EUR][1000 genomes]
rs11040652	0.81[EUR][1000 genomes]
rs11040653	0.81[EUR][1000 genomes]
rs11511999	0.80[EUR][1000 genomes]
rs11826453	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1381911	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1599692	1.00[ASN][1000 genomes]
rs1903778	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903779	0.81[ASN][1000 genomes]
rs325634	0.87[ASN][1000 genomes]
rs325639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs325640	1.00[JPT][hapmap]
rs325657	0.83[ASN][1000 genomes]
rs325661	0.86[ASN][1000 genomes]
rs325666	0.92[ASN][1000 genomes]
rs325697	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34220108	0.86[ASN][1000 genomes]
rs3921908	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4362124	0.81[EUR][1000 genomes]
rs4520575	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604856	0.81[EUR][1000 genomes]
rs4758077	0.81[EUR][1000 genomes]
rs4758079	0.81[EUR][1000 genomes]
rs4758080	0.81[EUR][1000 genomes]
rs4758085	1.00[ASN][1000 genomes]
rs4758086	0.89[ASN][1000 genomes]
rs4758379	0.81[EUR][1000 genomes]
rs4758380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758392	0.94[ASN][1000 genomes]
rs6578740	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578742	0.83[ASN][1000 genomes]
rs6578743	0.92[ASN][1000 genomes]
rs6578744	1.00[ASN][1000 genomes]
rs7110410	0.81[ASN][1000 genomes]
rs7117911	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7480133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7930953	0.89[ASN][1000 genomes]
rs7944650	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948429	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1052156	chr11:6003428-6107778	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv1047794	chr11:6003428-6116105	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	esv19708	chr11:6076999-6117545	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6098800-6100400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:6099400-6101000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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