Variant report

Variant	rs325640
Chromosome Location	chr11:6149047-6149048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:6148956-6149585	HUVEC	blood vessel:	n/a	n/a
2	GATA2	chr11:6148552-6149769	HUVEC	blood vessel:	n/a	chr11:6149279-6149286 chr11:6149653-6149663 chr11:6149652-6149668 chr11:6149274-6149288 chr11:6149656-6149663 chr11:6149279-6149286 chr11:6149656-6149663 chr11:6149655-6149665 chr11:6149654-6149666 chr11:6149275-6149291 chr11:6149272-6149293 chr11:6149279-6149286 chr11:6149656-6149663

Variant related genes	Relation type
OR56B3P	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11040761	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs11826453	1.00[JPT][hapmap]
rs1381911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1462983	0.81[CHB][hapmap]
rs1599692	0.84[EUR][1000 genomes]
rs1903779	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2344355	0.81[CHB][hapmap]
rs325634	0.81[EUR][1000 genomes]
rs325636	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs325639	0.82[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs325666	0.81[ASN][1000 genomes]
rs325697	1.00[JPT][hapmap];0.80[TSI][hapmap]
rs3921908	0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4758085	0.83[EUR][1000 genomes]
rs4758391	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs4758392	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6578742	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6578744	0.82[EUR][1000 genomes]
rs7110410	0.93[ASN][1000 genomes]
rs7480133	0.82[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv522884	chr11:6144998-6164700	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv467697	chr11:6144998-6164700	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv553370	chr11:6144998-6164700	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6147800-6150200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr11:6148400-6150000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:6148600-6153000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:6148800-6150000	Enhancers	HUVEC	blood vessel

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