Variant report

Variant	rs4520575
Chromosome Location	chr11:6114288-6114289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10839477	0.80[EUR][1000 genomes]
rs10839478	0.80[EUR][1000 genomes]
rs10839479	0.80[EUR][1000 genomes]
rs11040709	0.80[EUR][1000 genomes]
rs11040713	0.81[EUR][1000 genomes]
rs11040714	0.80[EUR][1000 genomes]
rs11040715	0.80[EUR][1000 genomes]
rs11040717	0.80[EUR][1000 genomes]
rs1381911	0.83[ASN][1000 genomes]
rs1462982	0.80[EUR][1000 genomes]
rs1599692	1.00[ASN][1000 genomes]
rs1903778	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903779	0.81[ASN][1000 genomes]
rs325634	0.87[ASN][1000 genomes]
rs325639	0.94[ASN][1000 genomes]
rs325657	0.83[ASN][1000 genomes]
rs325661	0.86[ASN][1000 genomes]
rs325666	0.92[ASN][1000 genomes]
rs34220108	0.86[ASN][1000 genomes]
rs3921908	1.00[ASN][1000 genomes]
rs4758078	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758085	1.00[ASN][1000 genomes]
rs4758086	0.89[ASN][1000 genomes]
rs4758380	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758392	0.94[ASN][1000 genomes]
rs6578740	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578742	0.83[ASN][1000 genomes]
rs6578743	0.92[ASN][1000 genomes]
rs6578744	1.00[ASN][1000 genomes]
rs7110410	0.81[ASN][1000 genomes]
rs7114613	0.80[EUR][1000 genomes]
rs7114866	0.80[EUR][1000 genomes]
rs7117911	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122336	0.81[EUR][1000 genomes]
rs7122340	0.80[EUR][1000 genomes]
rs7480133	0.94[ASN][1000 genomes]
rs7929863	0.81[EUR][1000 genomes]
rs7929888	0.81[EUR][1000 genomes]
rs7930953	0.89[ASN][1000 genomes]
rs7932413	0.80[EUR][1000 genomes]
rs7932884	0.81[EUR][1000 genomes]
rs7941058	0.80[EUR][1000 genomes]
rs7943059	0.80[EUR][1000 genomes]
rs7943285	0.80[EUR][1000 genomes]
rs7944650	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948429	0.89[ASN][1000 genomes]
rs7952121	0.80[EUR][1000 genomes]
rs7952132	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1047794	chr11:6003428-6116105	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	esv19708	chr11:6076999-6117545	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv10302	chr11:6104402-6121639	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv553353	chr11:6112857-6117526	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv9953	chr11:6114243-6122520	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6112800-6117200	Weak transcription	Fetal Heart	heart

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