Variant report

Variant	rs11041699
Chromosome Location	chr11:8005470-8005471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8003830..8006641-chr11:8007033..8010017,2	K562	blood:

Variant related genes	Relation type
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10839960	0.86[CHB][hapmap]
rs10839962	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs1105984	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap]
rs12273170	0.85[EUR][1000 genomes]
rs12280677	0.96[ASN][1000 genomes]
rs4076921	1.00[CHB][hapmap]
rs4559682	0.88[MEX][hapmap]
rs6578918	0.86[CHB][hapmap]
rs7126561	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7935597	0.85[CHB][hapmap]
rs7941107	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap]
rs7941782	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap]
rs7950331	1.00[CHB][hapmap]
rs922062	0.86[CHB][hapmap]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11041699	OR52K1	cis	parietal	SCAN
rs11041699	IPO7	cis	parietal	SCAN
rs11041699	C11orf42	cis	parietal	SCAN
rs11041699	EIF3F	Cis_1M	lymphoblastoid	RTeQTL
rs11041699	OR10A6	cis	parietal	SCAN
rs11041699	EIF3F	cis	lymphoblastoid	seeQTL
rs11041699	GALNTL4	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:7997000-8008200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:7997000-8008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:7999200-8007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:8000200-8007000	Weak transcription	Osteobl	bone
5	chr11:8000200-8007600	Weak transcription	HMEC	breast
6	chr11:8000400-8006400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:8000400-8006600	Weak transcription	HSMM	muscle
8	chr11:8000400-8007000	Weak transcription	NHLF	lung
9	chr11:8000400-8007400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:8000400-8007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:8000600-8007000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:8000600-8008200	Weak transcription	Lung	lung
13	chr11:8000800-8007600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:8001000-8006800	Weak transcription	HUVEC	blood vessel
15	chr11:8003200-8007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:8003600-8008000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:8004800-8006000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:8005200-8005600	Enhancers	HSMMtube	muscle
19	chr11:8005200-8007000	Weak transcription	Pancreas	Pancrea
20	chr11:8005400-8005800	Enhancers	Spleen	Spleen

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