Variant report

Variant	rs7126561
Chromosome Location	chr11:8011028-8011029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:8010997-8011222	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:8009756-8011030	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8008425..8011151-chr11:8011381..8013712,2	MCF-7	breast:
2	chr11:8010094..8012812-chr11:8018945..8021988,4	K562	blood:

Variant related genes	Relation type
EIF3F	TF binding region
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10839958	1.00[JPT][hapmap]
rs10839960	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10839962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041699	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs11041702	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1105984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1132660	0.93[ASN][1000 genomes]
rs12275353	1.00[JPT][hapmap]
rs12278319	1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs12294650	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3892448	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903047	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076921	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559682	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4758038	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6578918	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6578919	0.85[ASN][1000 genomes]
rs7125891	1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7935597	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7941107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs922062	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7126561	EIF3F	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8009400-8013400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:8009800-8014600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:8009800-8015800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:8010000-8011200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:8010000-8011600	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:8010000-8011800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:8010000-8012000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:8010000-8012000	Enhancers	Liver	Liver
9	chr11:8010000-8012000	Enhancers	Brain Angular Gyrus	brain
10	chr11:8010000-8012000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:8010000-8012800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:8010000-8013000	Weak transcription	Placenta	Placenta
13	chr11:8010000-8013000	Weak transcription	Gastric	stomach
14	chr11:8010000-8013200	Weak transcription	Aorta	Aorta
15	chr11:8010000-8013200	Weak transcription	Lung	lung
16	chr11:8010000-8013400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:8010000-8014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:8010200-8011200	Genic enhancers	Adipose Nuclei	Adipose
19	chr11:8010200-8011200	Genic enhancers	Duodenum Mucosa	Duodenum
20	chr11:8010200-8011200	Transcr. at gene 5' and 3'	Osteobl	bone
21	chr11:8010200-8011400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:8010200-8011400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:8010200-8011400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:8010200-8011800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:8010200-8011800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:8010200-8012200	Genic enhancers	Brain Hippocampus Middle	brain
27	chr11:8010200-8013000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:8010400-8011200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:8010400-8011200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:8010400-8011200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:8010400-8011200	Enhancers	Fetal Brain Female	brain
32	chr11:8010400-8011200	Genic enhancers	HepG2	liver
33	chr11:8010400-8011400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:8010400-8011400	Enhancers	Brain Germinal Matrix	brain
35	chr11:8010400-8011800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr11:8010400-8012000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:8010400-8012200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr11:8010400-8012800	Weak transcription	Esophagus	oesophagus
39	chr11:8010400-8013000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:8010400-8015800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:8010600-8011200	Genic enhancers	Brain Substantia Nigra	brain
42	chr11:8010600-8011600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:8010600-8011800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
44	chr11:8010600-8011800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:8010600-8012000	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:8010600-8013400	Weak transcription	Small Intestine	intestine
47	chr11:8010600-8013800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:8010600-8014200	Weak transcription	Fetal Kidney	kidney
49	chr11:8010600-8020400	Strong transcription	NH-A	brain
50	chr11:8010600-8020600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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