Variant report

Variant	rs10839958
Chromosome Location	chr11:8012284-8012285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8011622..8013297-chr11:8056375..8059181,2	K562	blood:
2	chr11:8008425..8011151-chr11:8011381..8013712,2	MCF-7	breast:
3	chr11:8010094..8012812-chr11:8018945..8021988,4	K562	blood:

Variant related genes	Relation type
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10839960	1.00[JPT][hapmap]
rs10839962	1.00[JPT][hapmap]
rs11041706	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1105984	1.00[JPT][hapmap]
rs1132659	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12275353	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12278319	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4076921	1.00[JPT][hapmap]
rs4559682	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4758038	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6578918	1.00[JPT][hapmap]
rs6578919	0.81[ASN][1000 genomes]
rs7125891	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7126561	1.00[JPT][hapmap]
rs7935597	1.00[JPT][hapmap]
rs7941107	1.00[JPT][hapmap]
rs7941782	1.00[JPT][hapmap]
rs7950331	1.00[JPT][hapmap]
rs922062	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8009400-8013400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:8009800-8014600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:8009800-8015800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:8010000-8012800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:8010000-8013000	Weak transcription	Placenta	Placenta
6	chr11:8010000-8013000	Weak transcription	Gastric	stomach
7	chr11:8010000-8013200	Weak transcription	Aorta	Aorta
8	chr11:8010000-8013200	Weak transcription	Lung	lung
9	chr11:8010000-8013400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:8010000-8014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8010200-8013000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:8010400-8012800	Weak transcription	Esophagus	oesophagus
13	chr11:8010400-8013000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:8010400-8015800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:8010600-8013400	Weak transcription	Small Intestine	intestine
16	chr11:8010600-8013800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:8010600-8014200	Weak transcription	Fetal Kidney	kidney
18	chr11:8010600-8020400	Strong transcription	NH-A	brain
19	chr11:8010600-8020600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:8010600-8020800	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:8010600-8022000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:8010600-8022400	Strong transcription	Primary B cells from cord blood	blood
23	chr11:8010800-8012600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:8010800-8012800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:8010800-8012800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:8010800-8012800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:8010800-8012800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:8010800-8012800	Weak transcription	Fetal Lung	lung
29	chr11:8010800-8012800	Weak transcription	Left Ventricle	heart
30	chr11:8010800-8013000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:8010800-8013000	Weak transcription	Fetal Stomach	stomach
32	chr11:8010800-8013000	Weak transcription	Right Ventricle	heart
33	chr11:8010800-8013200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:8010800-8013200	Weak transcription	Ovary	ovary
35	chr11:8010800-8013200	Weak transcription	Pancreas	Pancrea
36	chr11:8010800-8013200	Weak transcription	NHDF-Ad	bronchial
37	chr11:8010800-8013400	Weak transcription	Spleen	Spleen
38	chr11:8010800-8014000	Weak transcription	Stomach Mucosa	stomach
39	chr11:8010800-8014200	Weak transcription	Fetal Heart	heart
40	chr11:8010800-8014200	Weak transcription	Psoas Muscle	Psoas
41	chr11:8010800-8019800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:8010800-8021400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:8010800-8021400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr11:8010800-8021600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:8010800-8022000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:8010800-8022000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr11:8010800-8022000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
49	chr11:8011000-8012800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:8011000-8012800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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