Variant report

Variant	rs11041706
Chromosome Location	chr11:8024468-8024469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8007800..8010303-chr11:8022829..8024867,3	MCF-7	breast:
2	chr11:8015926..8019399-chr11:8021894..8024855,4	K562	blood:

Variant related genes	Relation type
ENSG00000175390	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10839958	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1132659	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12275353	0.81[ASN][1000 genomes]
rs12420464	1.00[MEX][hapmap]
rs4758038	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6578919	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
2	chr11:8016600-8025600	Weak transcription	Fetal Heart	heart
3	chr11:8017800-8024800	Weak transcription	Esophagus	oesophagus
4	chr11:8018000-8031800	Weak transcription	Aorta	Aorta
5	chr11:8018400-8032000	Weak transcription	Right Ventricle	heart
6	chr11:8019400-8024600	Weak transcription	Fetal Brain Male	brain
7	chr11:8020000-8024800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:8020000-8028200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:8020000-8033000	Weak transcription	NHDF-Ad	bronchial
10	chr11:8020200-8024600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:8020200-8025400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:8020200-8025400	Weak transcription	Brain Germinal Matrix	brain
13	chr11:8020200-8026600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:8020600-8025200	Weak transcription	HSMMtube	muscle
15	chr11:8020800-8024800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:8020800-8026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:8021400-8024600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:8021400-8024800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:8021800-8024600	Weak transcription	Fetal Stomach	stomach
20	chr11:8021800-8024800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:8022000-8024600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:8022000-8024800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:8022000-8024800	Weak transcription	Adipose Nuclei	Adipose
24	chr11:8022000-8025000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:8022000-8025000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:8022000-8025200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:8022000-8025200	Weak transcription	Brain Anterior Caudate	brain
28	chr11:8022000-8025400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:8022000-8025400	Weak transcription	Osteobl	bone
30	chr11:8022000-8026000	Weak transcription	Left Ventricle	heart
31	chr11:8022000-8026200	Weak transcription	Primary T cells from cord blood	blood
32	chr11:8022000-8027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:8022000-8027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:8022000-8028200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:8022000-8033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:8022000-8033200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:8022000-8033400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:8022200-8024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:8022200-8025200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:8022200-8025200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:8022200-8025200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:8022200-8025400	Weak transcription	Fetal Lung	lung
43	chr11:8022200-8025600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:8022200-8025600	Weak transcription	NHLF	lung
45	chr11:8022200-8027400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:8022200-8028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:8022200-8033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:8022200-8037200	Weak transcription	HMEC	breast
49	chr11:8022400-8025000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:8022400-8025400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links