Variant report

Variant	rs6578919
Chromosome Location	chr11:8020627-8020628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8010094..8012812-chr11:8018945..8021988,4	K562	blood:
2	chr11:8019325..8021766-chr11:8030520..8033012,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10839958	0.81[ASN][1000 genomes]
rs10839960	0.88[ASN][1000 genomes]
rs10839962	0.89[ASN][1000 genomes]
rs11041702	0.86[ASN][1000 genomes]
rs11041706	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1105984	0.85[ASN][1000 genomes]
rs1132659	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1132660	0.91[ASN][1000 genomes]
rs12278319	0.94[ASN][1000 genomes]
rs12294650	0.89[ASN][1000 genomes]
rs3892448	0.85[ASN][1000 genomes]
rs3903047	0.85[ASN][1000 genomes]
rs4076921	0.85[ASN][1000 genomes]
rs4559682	0.95[ASN][1000 genomes]
rs4758038	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578918	0.91[ASN][1000 genomes]
rs7125891	0.94[ASN][1000 genomes]
rs7126561	0.85[ASN][1000 genomes]
rs7935597	0.88[ASN][1000 genomes]
rs7941107	0.86[ASN][1000 genomes]
rs7941782	0.85[ASN][1000 genomes]
rs7950331	0.89[ASN][1000 genomes]
rs922062	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010600-8020800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:8010600-8022000	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:8010600-8022400	Strong transcription	Primary B cells from cord blood	blood
4	chr11:8010800-8021400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:8010800-8021400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr11:8010800-8021600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:8010800-8022000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:8010800-8022000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:8010800-8022000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
11	chr11:8011000-8021800	Strong transcription	Fetal Thymus	thymus
12	chr11:8011200-8022800	Strong transcription	HSMM	muscle
13	chr11:8011400-8021200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:8011400-8022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:8011400-8022000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:8011400-8022200	Strong transcription	HMEC	breast
17	chr11:8011600-8022200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:8011800-8022000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:8011800-8022000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:8011800-8022000	Strong transcription	Osteobl	bone
21	chr11:8012000-8022000	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr11:8012000-8022200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:8012200-8022000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:8012800-8020800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:8012800-8020800	Strong transcription	Fetal Intestine Large	intestine
26	chr11:8012800-8021400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:8012800-8022000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:8012800-8022000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:8012800-8022000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr11:8012800-8022000	Strong transcription	Left Ventricle	heart
31	chr11:8012800-8022200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:8012800-8022200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:8012800-8022200	Strong transcription	Fetal Lung	lung
34	chr11:8012800-8022200	Strong transcription	GM12878-XiMat	blood
35	chr11:8012800-8022200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:8012800-8022400	Strong transcription	Liver	Liver
37	chr11:8012800-8022600	Strong transcription	A549	lung
38	chr11:8012800-8022800	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:8013000-8020800	Strong transcription	Gastric	stomach
40	chr11:8013000-8020800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr11:8013000-8021200	Strong transcription	Placenta	Placenta
42	chr11:8013000-8021400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:8013000-8021800	Strong transcription	Fetal Brain Female	brain
44	chr11:8013000-8021800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:8013000-8022000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:8013000-8022000	Strong transcription	Primary T cells from cord blood	blood
47	chr11:8013000-8022000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:8013000-8022000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:8013000-8022200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:8013200-8020800	Strong transcription	Colonic Mucosa	Colon

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