Variant report

Variant	rs11041799
Chromosome Location	chr11:8218117-8218118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8216194..8218883-chr11:8223154..8225386,2	K562	blood:
2	chr11:8214526..8217689-chr11:8218013..8220798,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10732513	0.85[ASN][1000 genomes]
rs10743057	0.81[ASN][1000 genomes]
rs10743061	0.82[ASN][1000 genomes]
rs11041793	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041794	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041795	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041796	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041798	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041803	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041804	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12365701	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12786434	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12786736	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12793315	0.83[ASN][1000 genomes]
rs17227568	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3849990	0.86[ASN][1000 genomes]
rs3849992	0.84[ASN][1000 genomes]
rs3849993	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3911309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3911310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4123670	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4123671	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4412746	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4539318	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4564325	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4636658	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4758048	0.85[ASN][1000 genomes]
rs55885664	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56090029	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67639141	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7114892	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7482621	0.88[ASN][1000 genomes]
rs7948836	0.85[ASN][1000 genomes]
rs9783334	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11041799	RRP8	cis	parietal	SCAN
rs11041799	RRP8	cis	cerebellum	SCAN
rs11041799	OR2AG1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8214600-8218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:8214600-8218400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:8215400-8218400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:8215400-8220200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:8215800-8220200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:8217400-8223200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:8217600-8223800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:8218000-8219600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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