Variant report

Variant	rs9783334
Chromosome Location	chr11:8214635-8214636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8213801..8214811-chr11:8255818..8256741,4	MCF-7	breast:
2	chr11:8214233..8214925-chr11:8331212..8332019,2	MCF-7	breast:
3	chr11:8213811..8214943-chr11:8230472..8231459,4	K562	blood:
4	chr11:8213913..8214737-chr11:8588214..8589161,2	K562	blood:
5	chr11:8213871..8214757-chr11:8285265..8285950,3	MCF-7	breast:
6	chr11:8214526..8217689-chr11:8218013..8220798,3	K562	blood:

Variant related genes	Relation type
ENSG00000166407	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10732513	0.93[ASN][1000 genomes]
rs10743057	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10743061	0.92[ASN][1000 genomes]
rs10839997	0.81[AMR][1000 genomes]
rs11041792	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11041793	0.87[ASN][1000 genomes]
rs11041794	0.87[ASN][1000 genomes]
rs11041795	0.87[ASN][1000 genomes]
rs11041796	0.87[ASN][1000 genomes]
rs11041799	0.86[ASN][1000 genomes]
rs11041803	0.83[ASN][1000 genomes]
rs11041804	0.83[ASN][1000 genomes]
rs12365701	0.82[ASN][1000 genomes]
rs12786434	0.84[ASN][1000 genomes]
rs12786736	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12793315	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12802958	0.80[EUR][1000 genomes]
rs17227568	0.87[ASN][1000 genomes]
rs3849990	0.94[ASN][1000 genomes]
rs3849992	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3849993	0.84[ASN][1000 genomes]
rs3861071	0.82[ASN][1000 genomes]
rs3911309	0.87[ASN][1000 genomes]
rs3911310	0.87[ASN][1000 genomes]
rs4123670	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4123671	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4412746	0.87[ASN][1000 genomes]
rs4539318	0.83[ASN][1000 genomes]
rs4564325	0.87[ASN][1000 genomes]
rs4636658	0.84[ASN][1000 genomes]
rs4758048	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55885664	0.81[ASN][1000 genomes]
rs56090029	0.82[ASN][1000 genomes]
rs67639141	0.84[ASN][1000 genomes]
rs7112519	0.86[EUR][1000 genomes]
rs7114892	0.87[ASN][1000 genomes]
rs7115706	0.85[EUR][1000 genomes]
rs7117673	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7482621	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7948836	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9783292	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1826805	chr11:8201022-8215751	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1829890	chr11:8201022-8215751	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553444	chr11:8201125-8215751	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553445	chr11:8201305-8215853	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8213800-8215000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:8213800-8215200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:8214000-8214800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:8214000-8215400	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:8214200-8214800	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr11:8214200-8215200	Enhancers	Brain Germinal Matrix	brain
7	chr11:8214200-8215200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:8214400-8214800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8214400-8214800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:8214400-8214800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:8214400-8214800	Enhancers	Brain Angular Gyrus	brain
12	chr11:8214400-8214800	Enhancers	Brain Anterior Caudate	brain
13	chr11:8214400-8214800	Bivalent Enhancer	Placenta	Placenta
14	chr11:8214400-8214800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
15	chr11:8214400-8215000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:8214400-8215000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:8214400-8215000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:8214400-8215000	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:8214600-8214800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr11:8214600-8214800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:8214600-8216800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:8214600-8218400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:8214600-8218400	Weak transcription	Brain Substantia Nigra	brain

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