Variant report

Variant	rs9783292
Chromosome Location	chr11:8214022-8214023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10743057	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10839994	0.84[AMR][1000 genomes]
rs10839995	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11041788	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11041792	0.84[EUR][1000 genomes]
rs12786736	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12793315	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34809738	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3849992	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4123670	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4123671	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4758048	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7112519	0.82[EUR][1000 genomes]
rs7115706	0.82[EUR][1000 genomes]
rs7117673	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7482621	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7939157	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7948836	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9783334	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1826805	chr11:8201022-8215751	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1829890	chr11:8201022-8215751	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553444	chr11:8201125-8215751	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553445	chr11:8201305-8215853	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8213000-8214200	Weak transcription	Brain Germinal Matrix	brain
2	chr11:8213600-8214600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:8213600-8214600	Enhancers	Esophagus	oesophagus
4	chr11:8213800-8214400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:8213800-8215000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:8213800-8215200	Enhancers	Brain Hippocampus Middle	brain
7	chr11:8214000-8214600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:8214000-8214600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:8214000-8214600	Enhancers	Brain Substantia Nigra	brain
10	chr11:8214000-8214800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:8214000-8215400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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