Variant report

Variant	rs3861071
Chromosome Location	chr11:8219004-8219005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10732513	0.88[ASN][1000 genomes]
rs10743061	0.86[ASN][1000 genomes]
rs11041798	0.85[ASN][1000 genomes]
rs12786736	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12793315	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3849990	0.87[ASN][1000 genomes]
rs3849992	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4123670	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4123671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4758048	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7482621	0.84[ASN][1000 genomes]
rs7948836	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9783334	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8215400-8220200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:8215800-8220200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:8217400-8223200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:8217600-8223800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:8218000-8219600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8218400-8219200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:8218400-8219800	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:8218600-8219600	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:8218800-8223000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:8219000-8223200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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