Variant report

Variant	rs11041807
Chromosome Location	chr11:8229617-8229618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8229603..8232358-chr11:8234260..8235927,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4559683	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4627068	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56111207	0.81[ASN][1000 genomes]
rs7936137	0.84[ASN][1000 genomes]
rs7949087	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
2	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
3	chr11:8228000-8230000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:8228000-8230000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr11:8228600-8229800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8228600-8229800	Bivalent Enhancer	Fetal Stomach	stomach
7	chr11:8228800-8229800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:8228800-8229800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr11:8228800-8230000	Enhancers	Fetal Lung	lung
10	chr11:8228800-8230800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:8228800-8230800	Weak transcription	Ovary	ovary
12	chr11:8228800-8231000	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:8229000-8229800	Enhancers	Brain Germinal Matrix	brain
14	chr11:8229000-8229800	Enhancers	Brain Hippocampus Middle	brain
15	chr11:8229000-8229800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:8229000-8230000	Enhancers	Brain Substantia Nigra	brain
17	chr11:8229000-8231000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:8229200-8229800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr11:8229200-8229800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:8229200-8229800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:8229200-8230000	Enhancers	Brain Anterior Caudate	brain
22	chr11:8229200-8230600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:8229200-8234800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:8229200-8241400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:8229400-8229800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr11:8229400-8230400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:8229400-8230800	Weak transcription	Spleen	Spleen
28	chr11:8229400-8231000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:8229600-8229800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr11:8229600-8229800	Bivalent Enhancer	Fetal Brain Male	brain

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