Variant report

Variant	rs11042324
Chromosome Location	chr11:9409338-9409339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9408886..9410553-chr11:9412178..9413968,2	MCF-7	breast:
2	chr11:9403958..9411793-chr11:9477944..9485616,22	K562	blood:
3	chr11:9406437..9409790-chr11:9593475..9595985,3	K562	blood:
4	chr11:9334169..9339249-chr11:9404487..9409469,24	K562	blood:
5	chr11:9328102..9338305-chr11:9404480..9412498,38	K562	blood:
6	chr11:9405514..9407674-chr11:9408995..9413287,4	MCF-7	breast:
7	chr11:9405101..9410331-chr11:9478772..9485340,14	K562	blood:

Variant related genes	Relation type
ENSG00000166471	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000254884	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10128708	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11042323	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11042325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042346	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11042361	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042363	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042365	0.92[AMR][1000 genomes]
rs11042367	0.85[AMR][1000 genomes]
rs11601068	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12272069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12275828	0.83[AMR][1000 genomes]
rs12276413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279202	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12282862	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12286949	0.92[AMR][1000 genomes]
rs12294461	0.92[AMR][1000 genomes]
rs16906804	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28463550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34485398	0.92[AMR][1000 genomes]
rs36048375	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910052	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910463	0.92[AMR][1000 genomes]
rs55750964	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9407200-9409800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9407200-9410200	Weak transcription	Lung	lung
3	chr11:9407200-9425400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:9407200-9427000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:9407200-9430400	Weak transcription	Spleen	Spleen
6	chr11:9407200-9430600	Weak transcription	Esophagus	oesophagus
7	chr11:9407200-9430600	Weak transcription	Pancreas	Pancrea
8	chr11:9407200-9430800	Weak transcription	Gastric	stomach
9	chr11:9407400-9409800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:9407400-9409800	Weak transcription	Fetal Stomach	stomach
11	chr11:9407400-9410000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:9407400-9410400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:9407400-9410600	Weak transcription	Ovary	ovary
14	chr11:9407400-9414200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:9407400-9414200	Weak transcription	Thymus	Thymus
16	chr11:9407400-9427000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:9407400-9427000	Weak transcription	Left Ventricle	heart
18	chr11:9407600-9409400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:9407600-9410200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:9407600-9413400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:9407600-9431400	Weak transcription	HSMMtube	muscle
22	chr11:9407600-9442000	Weak transcription	Fetal Brain Male	brain
23	chr11:9407600-9464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:9407800-9409800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:9407800-9410000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:9407800-9412800	Weak transcription	Right Atrium	heart
27	chr11:9407800-9413400	Weak transcription	Fetal Intestine Large	intestine
28	chr11:9407800-9417000	Weak transcription	Placenta	Placenta
29	chr11:9407800-9417400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:9407800-9425400	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:9407800-9427000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:9408000-9410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:9408000-9411000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:9408000-9413400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:9408000-9419000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:9408000-9419200	Weak transcription	Fetal Lung	lung
37	chr11:9408000-9419800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:9408000-9424800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:9408200-9410800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:9408200-9418000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:9408200-9419600	Weak transcription	Primary B cells from cord blood	blood
42	chr11:9408200-9431000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:9408400-9413400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:9408400-9419000	Weak transcription	Brain Anterior Caudate	brain
45	chr11:9408400-9419200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:9408400-9428400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:9408600-9410200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:9408600-9411200	Strong transcription	Fetal Thymus	thymus
49	chr11:9408600-9413600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:9408600-9419400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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