Variant report

Variant	rs4910463
Chromosome Location	chr11:9393400-9393401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128708	0.92[AMR][1000 genomes]
rs11042308	0.84[AMR][1000 genomes]
rs11042310	0.84[AMR][1000 genomes]
rs11042318	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042323	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042324	0.92[AMR][1000 genomes]
rs11042325	0.92[AMR][1000 genomes]
rs11042346	0.92[AMR][1000 genomes]
rs11042361	0.92[AMR][1000 genomes]
rs11042363	0.85[AMR][1000 genomes]
rs11042365	0.85[AMR][1000 genomes]
rs11601068	0.92[AMR][1000 genomes]
rs12272069	0.92[AMR][1000 genomes]
rs12275828	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12276413	0.92[AMR][1000 genomes]
rs12279202	0.92[AMR][1000 genomes]
rs12282862	0.92[AMR][1000 genomes]
rs12286949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291406	0.84[AMR][1000 genomes]
rs12294461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16906804	0.92[AMR][1000 genomes]
rs28463550	0.92[AMR][1000 genomes]
rs34485398	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36048375	0.92[AMR][1000 genomes]
rs4910052	0.92[AMR][1000 genomes]
rs55750964	0.92[AMR][1000 genomes]
rs9971482	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4910463	ZNF143	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9394200	Weak transcription	HepG2	liver
2	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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