Variant report

Variant	rs11042529
Chromosome Location	chr11:9908561-9908562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10840315	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840323	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840325	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042526	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042534	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042543	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417800	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419564	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17270804	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17355675	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17355924	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910075	0.95[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910077	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910080	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4910081	0.81[AFR][1000 genomes]
rs61876937	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
3	chr11:9880200-9913200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:9880600-9914800	Weak transcription	Placenta	Placenta
5	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
6	chr11:9890600-9915200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:9891400-9916800	Weak transcription	Primary B cells from cord blood	blood
8	chr11:9891800-9916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:9892200-9914600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:9892400-9914400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:9892400-9914600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:9894000-9910600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:9894200-9915200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:9894400-9916600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
17	chr11:9897000-9915000	Weak transcription	HSMMtube	muscle
18	chr11:9897400-9909000	Weak transcription	Psoas Muscle	Psoas
19	chr11:9897800-9910000	Weak transcription	Fetal Kidney	kidney
20	chr11:9898200-9914800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:9898200-9917000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:9898400-9913800	Weak transcription	Fetal Stomach	stomach
23	chr11:9898600-9914800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:9898800-9915200	Weak transcription	Fetal Intestine Small	intestine
25	chr11:9899400-9915000	Weak transcription	Liver	Liver
26	chr11:9900600-9915000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:9901200-9915000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:9901200-9916600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:9902200-9917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:9902400-9913000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:9903400-9915000	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:9903600-9915200	Weak transcription	Ovary	ovary
33	chr11:9903600-9916600	Weak transcription	Fetal Lung	lung
34	chr11:9903800-9909000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:9903800-9914600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:9906000-9915000	Weak transcription	Fetal Intestine Large	intestine
38	chr11:9906400-9912800	Weak transcription	NHLF	lung
39	chr11:9906400-9914800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:9906400-9915000	Weak transcription	Osteobl	bone
41	chr11:9906600-9908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:9906800-9920400	Weak transcription	HUVEC	blood vessel
43	chr11:9907000-9914800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:9907400-9908600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr11:9907400-9909200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr11:9908000-9910200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:9908000-9910400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:9908200-9909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:9908200-9909600	Enhancers	NHDF-Ad	bronchial
50	chr11:9908200-9909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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