Variant report

Variant	rs11042554
Chromosome Location	chr11:9955896-9955897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10770075	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840327	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840337	0.82[EUR][1000 genomes]
rs10840338	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042543	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11042547	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042550	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042557	1.00[ASN][1000 genomes]
rs11042559	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042561	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042571	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11524438	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602465	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602515	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12421200	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17271847	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17356792	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4909915	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909916	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4910080	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910081	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784591	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876937	0.81[AMR][1000 genomes]
rs61876943	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876944	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876946	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876947	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116452	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130670	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7932661	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
2	chr11:9929200-9966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9944800-9961000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:9944800-9969000	Weak transcription	Ovary	ovary
6	chr11:9945000-9967600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:9945400-9964800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:9945600-9958400	Weak transcription	NHDF-Ad	bronchial
9	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:9952600-9966600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:9952600-9968600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:9952800-9956000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:9952800-9958400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:9952800-9967600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:9952800-9980200	Weak transcription	Aorta	Aorta
16	chr11:9952800-9980400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:9952800-9980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:9952800-9980600	Weak transcription	Spleen	Spleen
19	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:9953000-9956200	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:9953000-9962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:9953000-9963600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:9953000-9963600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:9953000-9963600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:9953000-9969200	Weak transcription	Fetal Intestine Small	intestine
26	chr11:9953000-9978200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:9953000-9979600	Weak transcription	Fetal Stomach	stomach
28	chr11:9953000-9980200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:9953000-9980200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:9953000-9980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:9953000-9980400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:9953000-9980400	Weak transcription	Esophagus	oesophagus
33	chr11:9953200-9963600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:9954400-9960800	Weak transcription	HepG2	liver

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