Variant report

Variant	rs11602515
Chromosome Location	chr11:9943751-9943752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10770075	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840315	1.00[CHB][hapmap]
rs10840325	1.00[CHB][hapmap]
rs10840327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840330	0.86[CEU][hapmap]
rs10840333	0.86[CEU][hapmap]
rs10840334	0.86[CEU][hapmap]
rs10840337	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10840338	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042486	1.00[CHB][hapmap]
rs11042500	1.00[CHB][hapmap]
rs11042511	1.00[CHB][hapmap]
rs11042526	1.00[CHB][hapmap]
rs11042543	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042547	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042550	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042554	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042556	1.00[CHB][hapmap]
rs11042557	1.00[ASN][1000 genomes]
rs11042559	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042561	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042571	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042579	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs11042595	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11042601	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11042609	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11042615	0.91[CEU][hapmap]
rs11042618	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11042623	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11042632	0.90[CEU][hapmap]
rs11524438	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602465	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607582	1.00[CHB][hapmap]
rs12417184	0.83[CEU][hapmap]
rs12417800	0.81[AMR][1000 genomes]
rs12418212	0.93[CEU][hapmap]
rs12419564	1.00[CHB][hapmap]
rs12419923	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12420734	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12421096	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12421179	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs12421200	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12808226	1.00[CHB][hapmap]
rs1372807	0.82[CEU][hapmap]
rs17268632	1.00[CHB][hapmap]
rs17270804	1.00[CHB][hapmap]
rs17271847	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17355675	1.00[CHB][hapmap]
rs17355924	1.00[CHB][hapmap]
rs17356792	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2403227	0.87[CEU][hapmap]
rs2403229	0.86[CEU][hapmap]
rs4576815	0.86[CEU][hapmap]
rs4625455	0.83[CEU][hapmap]
rs4909915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4909916	0.86[AMR][1000 genomes]
rs4909917	0.86[CEU][hapmap]
rs4910075	1.00[CHB][hapmap]
rs4910080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4910081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910084	1.00[CHB][hapmap]
rs4910086	0.86[CEU][hapmap]
rs4910505	1.00[CHB][hapmap]
rs55784591	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876937	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61876943	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876944	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876946	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876947	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114303	0.82[CEU][hapmap]
rs7116452	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129288	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130670	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928959	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7932661	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938502	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7938647	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7938788	0.83[CEU][hapmap]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1041148	chr11:9927980-9954537	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv976477	chr11:9929222-9945590	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv519992	chr11:9938545-9944824	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
3	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
4	chr11:9916800-9944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:9916800-9944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:9917600-9951800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:9917600-9952400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:9917800-9952600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:9923400-9952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:9924000-9944400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:9925200-9944400	Weak transcription	Ovary	ovary
12	chr11:9925400-9951000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:9925400-9952200	Weak transcription	Lung	lung
14	chr11:9927800-9944400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:9928000-9944200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:9928000-9944400	Weak transcription	Brain Anterior Caudate	brain
17	chr11:9928400-9944200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:9928600-9944200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:9929000-9944200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:9929000-9944400	Weak transcription	Liver	Liver
21	chr11:9929000-9952000	Weak transcription	Fetal Lung	lung
22	chr11:9929200-9966800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:9929400-9944400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:9929600-9944200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:9929600-9944400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:9929600-9944400	Weak transcription	HSMM	muscle
27	chr11:9929600-9944400	Weak transcription	Osteobl	bone
28	chr11:9929600-9953000	Weak transcription	HSMMtube	muscle
29	chr11:9930600-9944200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:9931000-9944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:9932000-9944400	Weak transcription	A549	lung
32	chr11:9933600-9946200	Weak transcription	Fetal Intestine Small	intestine
33	chr11:9934400-9944400	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:9934800-9952200	Weak transcription	Fetal Stomach	stomach
35	chr11:9935800-9944400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:9935800-9952000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:9936000-9944600	Weak transcription	NHDF-Ad	bronchial
38	chr11:9936200-9951800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:9936200-9952000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:9941200-9944400	Weak transcription	HMEC	breast
41	chr11:9941400-9944400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:9941600-9952400	Weak transcription	Fetal Brain Female	brain
43	chr11:9942200-9952200	Weak transcription	Fetal Intestine Large	intestine
44	chr11:9942800-9947400	Weak transcription	Right Atrium	heart
45	chr11:9943000-9944400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr11:9943000-9945400	Enhancers	NHEK	skin
47	chr11:9943200-9944200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:9943200-9944200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:9943200-9944600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:9943400-9944000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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