Variant report

Variant	rs4625455
Chromosome Location	chr11:10120267-10120268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10500715	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10500717	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs10770079	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10840327	0.82[CEU][hapmap]
rs10840330	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10840333	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs10840334	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10840337	0.82[CEU][hapmap]
rs10840338	0.87[CEU][hapmap]
rs10840347	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs10840348	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs10840361	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs10840362	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10840370	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10840377	0.91[CEU][hapmap]
rs11042559	0.83[CEU][hapmap]
rs11042561	0.86[CEU][hapmap]
rs11042574	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11042579	0.87[CEU][hapmap]
rs11042589	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11042590	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs11042591	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs11042595	0.91[CEU][hapmap]
rs11042601	0.91[CEU][hapmap]
rs11042604	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11042605	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11042609	0.91[CEU][hapmap]
rs11042613	0.93[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap]
rs11042615	0.91[CEU][hapmap]
rs11042618	0.91[CEU][hapmap]
rs11042623	0.90[CEU][hapmap]
rs11042624	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042632	0.95[CEU][hapmap]
rs11042639	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042641	0.88[CEU][hapmap]
rs11042645	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11042669	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs11530489	0.88[YRI][hapmap]
rs11600251	0.91[CEU][hapmap]
rs11602515	0.83[CEU][hapmap]
rs11606561	0.91[CEU][hapmap]
rs12222953	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12273035	0.81[YRI][hapmap]
rs12274021	0.81[YRI][hapmap]
rs12283105	1.00[JPT][hapmap]
rs12360783	0.91[CEU][hapmap]
rs12362060	0.87[CEU][hapmap]
rs12417184	0.83[CEU][hapmap]
rs12418212	0.87[CEU][hapmap]
rs12419923	0.87[CEU][hapmap]
rs12420734	0.89[CEU][hapmap]
rs12421096	0.91[CEU][hapmap]
rs12421179	0.81[CEU][hapmap]
rs12421200	0.87[CEU][hapmap]
rs12575719	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1372807	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1372812	0.81[YRI][hapmap]
rs1442732	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1442737	0.91[CEU][hapmap]
rs16907368	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs16907396	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs16907632	0.81[YRI][hapmap]
rs17271847	0.87[CEU][hapmap]
rs17356792	0.87[CEU][hapmap]
rs17359113	0.91[CEU][hapmap]
rs1822292	0.86[CEU][hapmap]
rs2197171	0.91[CEU][hapmap]
rs2403226	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2403227	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2403229	0.95[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs2403292	0.91[CEU][hapmap]
rs4281477	0.91[CEU][hapmap]
rs4576815	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs4909915	0.83[CEU][hapmap]
rs4909917	0.95[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4910081	0.82[CEU][hapmap]
rs4910086	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4910095	0.91[CEU][hapmap]
rs7106914	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs7114303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7123453	0.91[CEU][hapmap]
rs7131445	0.87[CEU][hapmap]
rs7928959	0.91[CEU][hapmap]
rs7935934	0.91[CEU][hapmap]
rs7938491	0.91[CEU][hapmap]
rs7938502	0.91[CEU][hapmap]
rs7938647	0.91[CEU][hapmap]
rs7938788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7946995	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7950447	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10110400-10122200	Weak transcription	HSMM	muscle
4	chr11:10112400-10122000	Weak transcription	NHLF	lung
5	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:10116800-10125400	Weak transcription	Ovary	ovary
7	chr11:10116800-10131000	Weak transcription	Gastric	stomach
8	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10117600-10120600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:10118200-10121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:10118800-10121800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea
16	chr11:10119400-10122400	ZNF genes & repeats	Fetal Lung	lung
17	chr11:10119600-10121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:10119600-10121800	Weak transcription	Left Ventricle	heart
19	chr11:10119800-10125200	Weak transcription	Aorta	Aorta
20	chr11:10120000-10121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10120000-10121800	Weak transcription	Right Atrium	heart
22	chr11:10120000-10122800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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