Variant report

Variant	rs7946995
Chromosome Location	chr11:10093760-10093761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10093616..10094485-chr4:5814395..5815135,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10458929	0.97[ASN][1000 genomes]
rs10500715	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs10500717	0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs10743123	0.81[EUR][1000 genomes]
rs10743129	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10770077	0.81[EUR][1000 genomes]
rs10770079	0.94[JPT][hapmap]
rs10770092	0.86[ASN][1000 genomes]
rs10840330	0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10840333	0.92[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10840334	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10840344	0.82[EUR][1000 genomes]
rs10840347	0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs10840348	0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs10840352	0.92[ASN][1000 genomes]
rs10840359	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840361	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840362	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10840370	0.92[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11042574	0.94[JPT][hapmap]
rs11042589	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs11042590	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs11042591	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs11042593	0.87[EUR][1000 genomes]
rs11042595	0.89[EUR][1000 genomes]
rs11042601	0.91[EUR][1000 genomes]
rs11042604	0.92[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs11042605	0.92[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs11042606	0.94[ASN][1000 genomes]
rs11042609	0.90[EUR][1000 genomes]
rs11042610	0.97[ASN][1000 genomes]
rs11042613	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11042615	0.90[EUR][1000 genomes]
rs11042618	0.89[EUR][1000 genomes]
rs11042623	0.90[EUR][1000 genomes]
rs11042624	0.92[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs11042627	0.83[EUR][1000 genomes]
rs11042632	0.88[EUR][1000 genomes]
rs11042634	0.88[ASN][1000 genomes]
rs11042635	0.90[ASN][1000 genomes]
rs11042639	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs11042641	0.89[EUR][1000 genomes]
rs11042645	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs11042669	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs11530489	0.93[ASN][1000 genomes]
rs11600251	0.89[EUR][1000 genomes]
rs11600489	0.88[EUR][1000 genomes]
rs11606561	0.89[EUR][1000 genomes]
rs11607682	0.90[EUR][1000 genomes]
rs11607703	0.90[EUR][1000 genomes]
rs12222953	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs12283105	0.93[JPT][hapmap]
rs12290996	0.81[EUR][1000 genomes]
rs12360783	0.85[EUR][1000 genomes]
rs12362938	0.89[EUR][1000 genomes]
rs12364676	0.87[EUR][1000 genomes]
rs12417184	0.88[EUR][1000 genomes]
rs12418212	0.90[EUR][1000 genomes]
rs12418619	0.90[EUR][1000 genomes]
rs12420734	0.91[EUR][1000 genomes]
rs12421096	0.89[EUR][1000 genomes]
rs12421179	0.89[EUR][1000 genomes]
rs12421931	0.89[EUR][1000 genomes]
rs12575719	0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1372807	0.92[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs1442732	0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1442737	0.85[EUR][1000 genomes]
rs16907368	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs16907396	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs17359113	0.85[EUR][1000 genomes]
rs2403226	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2403227	0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs2403229	0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs2403292	0.81[EUR][1000 genomes]
rs28731164	0.90[EUR][1000 genomes]
rs34683105	0.81[EUR][1000 genomes]
rs4281477	0.81[EUR][1000 genomes]
rs4478985	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529876	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576815	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs4625455	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs4909917	0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs4910086	0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs4910095	0.81[EUR][1000 genomes]
rs56853694	0.85[EUR][1000 genomes]
rs59757006	0.87[ASN][1000 genomes]
rs61877048	0.88[EUR][1000 genomes]
rs61877049	0.88[EUR][1000 genomes]
rs61878582	0.91[EUR][1000 genomes]
rs61878587	0.89[EUR][1000 genomes]
rs61878622	0.90[EUR][1000 genomes]
rs61878636	0.89[EUR][1000 genomes]
rs7106914	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7114044	0.81[EUR][1000 genomes]
rs7114303	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121617	0.84[ASN][1000 genomes]
rs7123453	0.87[EUR][1000 genomes]
rs7123820	0.89[EUR][1000 genomes]
rs7924875	0.81[EUR][1000 genomes]
rs7928959	0.88[EUR][1000 genomes]
rs7935934	0.81[EUR][1000 genomes]
rs7938491	0.87[EUR][1000 genomes]
rs7938502	0.87[EUR][1000 genomes]
rs7938647	0.89[EUR][1000 genomes]
rs7938788	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945980	0.81[EUR][1000 genomes]
rs7947306	0.89[EUR][1000 genomes]
rs7950447	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10085000-10098200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:10087800-10097800	Weak transcription	Right Atrium	heart
5	chr11:10090000-10098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:10093200-10097600	Weak transcription	Fetal Intestine Small	intestine
7	chr11:10093400-10094800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10093600-10094400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:10093600-10094800	Enhancers	Osteobl	bone

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