Variant report

Variant	rs10743129
Chromosome Location	chr11:10130363-10130364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10129087..10131222-chr11:10133484..10136579,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10458929	0.81[ASN][1000 genomes]
rs10770092	0.86[ASN][1000 genomes]
rs10840359	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840362	0.82[ASN][1000 genomes]
rs10840370	0.91[ASN][1000 genomes]
rs11042604	0.81[ASN][1000 genomes]
rs11042605	0.81[ASN][1000 genomes]
rs11042606	0.81[ASN][1000 genomes]
rs11042609	0.81[EUR][1000 genomes]
rs11042610	0.81[ASN][1000 genomes]
rs11042615	0.81[EUR][1000 genomes]
rs11042618	0.81[EUR][1000 genomes]
rs11042623	0.81[EUR][1000 genomes]
rs11042624	0.90[ASN][1000 genomes]
rs11042630	0.95[ASN][1000 genomes]
rs11042632	0.82[EUR][1000 genomes]
rs11042634	0.85[ASN][1000 genomes]
rs11042635	0.84[ASN][1000 genomes]
rs11042639	0.94[ASN][1000 genomes]
rs11042645	0.87[ASN][1000 genomes]
rs11042647	0.88[ASN][1000 genomes]
rs11530489	0.85[ASN][1000 genomes]
rs11607682	0.81[EUR][1000 genomes]
rs11607703	0.81[EUR][1000 genomes]
rs12417184	0.82[EUR][1000 genomes]
rs12418212	0.81[EUR][1000 genomes]
rs12418619	0.81[EUR][1000 genomes]
rs12420734	0.80[EUR][1000 genomes]
rs12421096	0.81[EUR][1000 genomes]
rs12421179	0.81[EUR][1000 genomes]
rs12421931	0.81[EUR][1000 genomes]
rs12575719	0.91[ASN][1000 genomes]
rs1372807	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1442732	0.83[ASN][1000 genomes]
rs28731164	0.81[EUR][1000 genomes]
rs4478985	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4529876	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59757006	0.81[ASN][1000 genomes]
rs61878582	0.80[EUR][1000 genomes]
rs61878587	0.81[EUR][1000 genomes]
rs61878622	0.81[EUR][1000 genomes]
rs61878636	0.81[EUR][1000 genomes]
rs7114303	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7121617	0.93[ASN][1000 genomes]
rs7938788	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946995	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950447	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10116800-10131000	Weak transcription	Gastric	stomach
2	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:10120800-10131000	Weak transcription	A549	lung
5	chr11:10121200-10130400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:10121400-10131200	Weak transcription	Liver	Liver
7	chr11:10122200-10130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:10122200-10131000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
10	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:10122400-10130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:10122400-10130800	Weak transcription	Fetal Lung	lung
13	chr11:10122400-10130800	Weak transcription	HSMM	muscle
14	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
16	chr11:10122600-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10122600-10130800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:10122800-10130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:10122800-10130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:10122800-10131000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10123000-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
26	chr11:10126200-10131000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:10126200-10143000	Weak transcription	Ovary	ovary
28	chr11:10128000-10131000	Enhancers	NHDF-Ad	bronchial
29	chr11:10128400-10131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:10128800-10132200	Enhancers	Colon Smooth Muscle	Colon
31	chr11:10128800-10132200	Enhancers	Fetal Heart	heart
32	chr11:10129000-10131400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:10129000-10131800	Enhancers	Adipose Nuclei	Adipose
34	chr11:10129000-10131800	Enhancers	Rectal Smooth Muscle	rectum
35	chr11:10129000-10132400	Enhancers	Osteobl	bone
36	chr11:10129200-10130600	Enhancers	Psoas Muscle	Psoas
37	chr11:10129200-10131000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:10129200-10131000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:10129400-10130400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:10129400-10130400	Weak transcription	NHLF	lung
41	chr11:10129400-10130600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:10129400-10131000	Weak transcription	Aorta	Aorta
43	chr11:10129800-10131000	Enhancers	HSMMtube	muscle
44	chr11:10130000-10130400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:10130000-10131000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:10130200-10131200	Enhancers	Fetal Muscle Leg	muscle

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