Variant report

Variant	rs12418212
Chromosome Location	chr11:10121157-10121158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10743129	0.81[EUR][1000 genomes]
rs10770103	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840327	0.92[CEU][hapmap]
rs10840337	0.85[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840338	0.93[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840344	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840359	0.91[EUR][1000 genomes]
rs10840375	0.84[EUR][1000 genomes]
rs10840377	1.00[CEU][hapmap]
rs11042543	0.85[CEU][hapmap]
rs11042550	0.93[CEU][hapmap]
rs11042559	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs11042561	0.92[CEU][hapmap]
rs11042571	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042578	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042579	0.93[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042580	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11042593	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042595	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042618	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042632	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11042641	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600251	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11600489	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11602515	0.93[CEU][hapmap]
rs11603440	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606561	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607682	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607703	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12362060	0.93[CEU][hapmap]
rs12362938	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364676	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12417184	0.82[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12418514	1.00[ASN][1000 genomes]
rs12418619	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	0.93[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420122	0.83[EUR][1000 genomes]
rs12420734	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12420950	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421096	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12421179	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421200	0.92[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421931	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372807	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs1372808	0.82[EUR][1000 genomes]
rs1442737	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17271847	0.93[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17356792	0.92[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359113	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1822291	0.83[EUR][1000 genomes]
rs1822292	0.93[CEU][hapmap]
rs1867135	0.84[EUR][1000 genomes]
rs2197171	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2403292	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs28731164	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34683105	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4271380	0.83[EUR][1000 genomes]
rs4281477	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4345958	1.00[ASN][1000 genomes]
rs4385889	0.83[EUR][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4478985	0.91[EUR][1000 genomes]
rs4519084	0.83[EUR][1000 genomes]
rs4529876	0.92[EUR][1000 genomes]
rs4625455	0.87[CEU][hapmap]
rs4643073	0.81[EUR][1000 genomes]
rs4909915	0.93[CEU][hapmap]
rs4910080	0.92[CEU][hapmap]
rs4910081	0.92[CEU][hapmap]
rs4910095	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910098	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788918	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.83[EUR][1000 genomes]
rs56853694	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61877048	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877049	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878582	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7114303	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs7123453	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123820	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	0.93[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924875	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7928959	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935774	0.84[EUR][1000 genomes]
rs7935934	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7938491	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7938502	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938647	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938788	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs7945980	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7946995	0.90[EUR][1000 genomes]
rs7947306	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7948215	0.85[EUR][1000 genomes]
rs7950447	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10110400-10122200	Weak transcription	HSMM	muscle
4	chr11:10112400-10122000	Weak transcription	NHLF	lung
5	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:10116800-10125400	Weak transcription	Ovary	ovary
7	chr11:10116800-10131000	Weak transcription	Gastric	stomach
8	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:10118200-10121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:10118800-10121800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea
15	chr11:10119400-10122400	ZNF genes & repeats	Fetal Lung	lung
16	chr11:10119600-10121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:10119600-10121800	Weak transcription	Left Ventricle	heart
18	chr11:10119800-10125200	Weak transcription	Aorta	Aorta
19	chr11:10120000-10121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:10120000-10121800	Weak transcription	Right Atrium	heart
21	chr11:10120000-10122800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:10120600-10121200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr11:10120600-10123400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:10120600-10129200	Weak transcription	Psoas Muscle	Psoas
26	chr11:10120800-10123400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:10120800-10131000	Weak transcription	A549	lung
28	chr11:10121000-10129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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