Variant report

Variant	rs7931804
Chromosome Location	chr11:10155676-10155677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10770103	1.00[ASN][1000 genomes]
rs10840337	1.00[ASN][1000 genomes]
rs10840338	1.00[ASN][1000 genomes]
rs10840344	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042571	1.00[ASN][1000 genomes]
rs11042578	1.00[ASN][1000 genomes]
rs11042579	1.00[ASN][1000 genomes]
rs11042593	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042595	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11042618	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042627	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042632	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042641	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042731	1.00[ASN][1000 genomes]
rs11599958	1.00[ASN][1000 genomes]
rs11600251	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11600489	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11603440	1.00[ASN][1000 genomes]
rs11606561	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11607682	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607703	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12362938	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364676	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	1.00[ASN][1000 genomes]
rs12417184	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12418212	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418514	1.00[ASN][1000 genomes]
rs12418619	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	1.00[ASN][1000 genomes]
rs12420640	1.00[ASN][1000 genomes]
rs12420734	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12420950	1.00[ASN][1000 genomes]
rs12421096	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12421179	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421200	1.00[ASN][1000 genomes]
rs12421931	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442737	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17271847	1.00[ASN][1000 genomes]
rs17356792	1.00[ASN][1000 genomes]
rs17359113	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28731164	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4345958	1.00[ASN][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4910098	1.00[ASN][1000 genomes]
rs55788918	1.00[ASN][1000 genomes]
rs55923001	1.00[ASN][1000 genomes]
rs56853694	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61877048	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877049	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878582	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	1.00[ASN][1000 genomes]
rs61891765	1.00[ASN][1000 genomes]
rs7104093	1.00[ASN][1000 genomes]
rs7123453	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7123820	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	1.00[ASN][1000 genomes]
rs7924875	0.86[AMR][1000 genomes]
rs7928959	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935934	0.83[AMR][1000 genomes]
rs7938491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7938502	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938647	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945980	0.83[AMR][1000 genomes]
rs7947306	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7950447	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10140000-10156200	Weak transcription	Fetal Lung	lung
5	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10144600-10156400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10144800-10161400	Weak transcription	HSMM	muscle
9	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
10	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:10145800-10156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:10147800-10160800	Weak transcription	NHEK	skin
14	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:10148400-10161400	Weak transcription	NHLF	lung
18	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:10151800-10156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:10152600-10156200	Weak transcription	Right Ventricle	heart
23	chr11:10152800-10156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:10152800-10161400	Weak transcription	Ovary	ovary
25	chr11:10153000-10156200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:10153800-10156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:10154800-10156000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:10155000-10157000	Strong transcription	Fetal Stomach	stomach
29	chr11:10155600-10156000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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