Variant report

Variant	rs56853694
Chromosome Location	chr11:10181127-10181128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10770103	0.88[EUR][1000 genomes]
rs10840344	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10840359	0.86[EUR][1000 genomes]
rs10840375	0.89[EUR][1000 genomes]
rs10840377	0.84[EUR][1000 genomes]
rs11042593	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042595	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042601	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042609	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042615	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042618	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042623	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042627	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042632	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042641	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042683	0.85[EUR][1000 genomes]
rs11600251	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600489	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606561	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607682	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11607703	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12360783	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362060	0.84[EUR][1000 genomes]
rs12362938	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12364676	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12416695	0.83[EUR][1000 genomes]
rs12417184	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12418619	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12420122	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12420734	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12420950	0.81[EUR][1000 genomes]
rs12421096	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421179	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421931	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1372807	0.84[EUR][1000 genomes]
rs1372808	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1442737	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359113	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822291	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1822292	0.85[EUR][1000 genomes]
rs1867135	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2197171	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2403292	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731164	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34683105	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4271380	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4281477	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4385889	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4478985	0.84[EUR][1000 genomes]
rs4519084	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4529876	0.85[EUR][1000 genomes]
rs4643073	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910095	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4910098	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55788918	0.88[EUR][1000 genomes]
rs55796222	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61877048	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61877049	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61878582	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878587	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878622	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878636	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61889838	0.84[EUR][1000 genomes]
rs7114303	0.84[EUR][1000 genomes]
rs7123453	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7123820	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7924875	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928959	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7931804	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7935774	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7935934	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938491	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938502	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7938647	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7938788	0.84[EUR][1000 genomes]
rs7945980	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946995	0.85[EUR][1000 genomes]
rs7947306	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948215	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7950447	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv975150	chr11:10174580-10182242	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10176200-10184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:10177800-10183200	Weak transcription	Ovary	ovary
4	chr11:10177800-10183800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:10178000-10182200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10178000-10182200	Weak transcription	HMEC	breast
7	chr11:10178000-10183600	Weak transcription	Right Ventricle	heart
8	chr11:10178200-10182200	Weak transcription	NHLF	lung
9	chr11:10178200-10182400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10179800-10181200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:10180200-10186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10180400-10181200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10180600-10181800	Weak transcription	Osteobl	bone
16	chr11:10180600-10182000	Weak transcription	NHDF-Ad	bronchial
17	chr11:10180600-10182200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10180600-10182400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10180600-10182800	Weak transcription	HSMM	muscle
20	chr11:10181000-10181400	Weak transcription	Hela-S3	cervix

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