Variant report

Variant	rs11042627
Chromosome Location	chr11:10122958-10122959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10770103	1.00[ASN][1000 genomes]
rs10840337	1.00[ASN][1000 genomes]
rs10840338	1.00[ASN][1000 genomes]
rs10840344	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840359	0.84[EUR][1000 genomes]
rs11042571	1.00[ASN][1000 genomes]
rs11042578	1.00[ASN][1000 genomes]
rs11042579	1.00[ASN][1000 genomes]
rs11042593	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042595	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042609	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042615	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042618	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042623	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042632	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11042641	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11600251	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11600489	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11603440	1.00[ASN][1000 genomes]
rs11606561	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11607682	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607703	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360783	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12362938	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364676	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416695	1.00[ASN][1000 genomes]
rs12417184	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12418212	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418514	1.00[ASN][1000 genomes]
rs12418619	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419923	1.00[ASN][1000 genomes]
rs12420734	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12420950	1.00[ASN][1000 genomes]
rs12421096	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421179	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421200	1.00[ASN][1000 genomes]
rs12421931	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372807	0.84[EUR][1000 genomes]
rs1442737	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17271847	1.00[ASN][1000 genomes]
rs17356792	1.00[ASN][1000 genomes]
rs17359113	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2403292	0.82[EUR][1000 genomes]
rs28731164	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34683105	0.82[EUR][1000 genomes]
rs4281477	0.82[EUR][1000 genomes]
rs4345958	1.00[ASN][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4478985	0.84[EUR][1000 genomes]
rs4529876	0.85[EUR][1000 genomes]
rs4910095	0.82[EUR][1000 genomes]
rs4910098	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788918	1.00[ASN][1000 genomes]
rs56853694	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61877048	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877049	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878582	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878587	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878622	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	1.00[ASN][1000 genomes]
rs7114303	0.84[EUR][1000 genomes]
rs7123453	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7123820	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131445	1.00[ASN][1000 genomes]
rs7924875	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928959	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7935934	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7938491	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7938502	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938647	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938788	0.84[EUR][1000 genomes]
rs7945980	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7946995	0.83[EUR][1000 genomes]
rs7947306	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7950447	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:10116800-10125400	Weak transcription	Ovary	ovary
3	chr11:10116800-10131000	Weak transcription	Gastric	stomach
4	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea
8	chr11:10119800-10125200	Weak transcription	Aorta	Aorta
9	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:10120600-10123400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:10120600-10129200	Weak transcription	Psoas Muscle	Psoas
12	chr11:10120800-10123400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:10120800-10131000	Weak transcription	A549	lung
14	chr11:10121000-10129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:10121200-10123600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:10121200-10130400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:10121400-10126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10121400-10131200	Weak transcription	Liver	Liver
19	chr11:10121800-10123000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr11:10121800-10123000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:10121800-10123000	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr11:10121800-10123000	ZNF genes & repeats	Placenta	Placenta
23	chr11:10121800-10123200	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr11:10122000-10123000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:10122200-10123000	Enhancers	Colon Smooth Muscle	Colon
26	chr11:10122200-10123000	Enhancers	Small Intestine	intestine
27	chr11:10122200-10127200	Weak transcription	Right Atrium	heart
28	chr11:10122200-10129000	Weak transcription	Adipose Nuclei	Adipose
29	chr11:10122200-10129000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:10122200-10130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:10122200-10131000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
33	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:10122400-10126000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:10122400-10126000	Weak transcription	Lung	lung
36	chr11:10122400-10127800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:10122400-10129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:10122400-10130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:10122400-10130800	Weak transcription	Fetal Lung	lung
40	chr11:10122400-10130800	Weak transcription	HSMM	muscle
41	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
43	chr11:10122600-10123000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:10122600-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10122600-10130800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:10122800-10123000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr11:10122800-10123200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:10122800-10124800	Active TSS	NHDF-Ad	bronchial
49	chr11:10122800-10129000	Weak transcription	NHLF	lung
50	chr11:10122800-10130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links