Variant report

Variant	rs11606561
Chromosome Location	chr11:10161804-10161805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10770103	0.86[EUR][1000 genomes]
rs10840330	0.86[CEU][hapmap]
rs10840333	0.86[CEU][hapmap]
rs10840334	0.86[CEU][hapmap]
rs10840337	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10840338	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10840344	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840359	0.90[EUR][1000 genomes]
rs10840375	0.87[EUR][1000 genomes]
rs10840377	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11042561	0.95[CEU][hapmap]
rs11042571	0.83[EUR][1000 genomes]
rs11042578	0.81[EUR][1000 genomes]
rs11042579	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11042580	0.81[EUR][1000 genomes]
rs11042593	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042595	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042601	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042609	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042618	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042623	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11042627	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042683	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11600251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600489	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603440	0.81[EUR][1000 genomes]
rs11607682	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607703	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12360783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12362938	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12364676	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12416695	0.81[EUR][1000 genomes]
rs12417184	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418212	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12418619	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12419923	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs12420122	0.86[EUR][1000 genomes]
rs12420734	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12420950	0.85[EUR][1000 genomes]
rs12421096	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12421179	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12421200	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12421931	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1372807	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1372808	0.85[EUR][1000 genomes]
rs1372811	1.00[CHB][hapmap]
rs1442737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271847	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs17356792	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs17359113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822291	0.86[EUR][1000 genomes]
rs1822292	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs1822293	1.00[CHB][hapmap]
rs1867135	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2044142	1.00[YRI][hapmap]
rs2197171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2403227	0.86[CEU][hapmap]
rs2403229	0.86[CEU][hapmap]
rs2403292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731164	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34683105	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4271380	0.86[EUR][1000 genomes]
rs4281477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4385889	0.86[EUR][1000 genomes]
rs4478985	0.88[EUR][1000 genomes]
rs4519084	0.86[EUR][1000 genomes]
rs4529876	0.89[EUR][1000 genomes]
rs4576815	0.86[CEU][hapmap]
rs4625455	0.91[CEU][hapmap]
rs4643073	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4909917	0.86[CEU][hapmap]
rs4910086	0.86[CEU][hapmap]
rs4910095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4910098	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910111	1.00[CHB][hapmap]
rs55788918	0.86[EUR][1000 genomes]
rs55796222	0.86[EUR][1000 genomes]
rs56853694	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877048	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877049	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878582	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61878587	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61878622	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61878636	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889838	0.82[EUR][1000 genomes]
rs7104093	1.00[CEU][hapmap]
rs7110151	1.00[CHB][hapmap]
rs7114303	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7123453	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7123820	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7124401	1.00[CHB][hapmap]
rs7131445	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs7924875	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928959	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7931804	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7935774	0.87[EUR][1000 genomes]
rs7935934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938502	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7938647	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7938788	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7945980	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946995	0.89[EUR][1000 genomes]
rs7947306	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948215	0.88[EUR][1000 genomes]
rs7950447	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520415	chr11:10159237-10164456	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
2	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
4	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:10160400-10162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:10160800-10162000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:10160800-10162000	Enhancers	Osteobl	bone
9	chr11:10160800-10162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:10160800-10162400	Enhancers	Hela-S3	cervix
13	chr11:10160800-10162400	Enhancers	HMEC	breast
14	chr11:10160800-10162400	Enhancers	HUVEC	blood vessel
15	chr11:10160800-10162400	Enhancers	NHEK	skin
16	chr11:10160800-10163000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:10160800-10164600	Enhancers	NHDF-Ad	bronchial
18	chr11:10161000-10162000	Enhancers	HSMMtube	muscle
19	chr11:10161000-10162200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:10161000-10162200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:10161200-10162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:10161200-10162000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:10161200-10162000	Enhancers	Colon Smooth Muscle	Colon
24	chr11:10161200-10162000	Enhancers	Rectal Smooth Muscle	rectum
25	chr11:10161200-10162400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:10161200-10162400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10161400-10162000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:10161400-10162000	Enhancers	Ovary	ovary
29	chr11:10161400-10162000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:10161400-10162000	Enhancers	Psoas Muscle	Psoas
31	chr11:10161400-10162000	Enhancers	Right Atrium	heart
32	chr11:10161400-10162000	Enhancers	A549	lung
33	chr11:10161400-10162400	Enhancers	Right Ventricle	heart
34	chr11:10161400-10162400	Enhancers	HSMM	muscle
35	chr11:10161400-10162400	Enhancers	NHLF	lung
36	chr11:10161400-10163000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:10161600-10162400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:10161800-10162200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10161800-10162200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:10161800-10162200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:10161800-10162400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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