Variant report

Variant	rs12360783
Chromosome Location	chr11:10185365-10185366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10770103	0.91[EUR][1000 genomes]
rs10840337	0.95[CEU][hapmap]
rs10840338	0.95[CEU][hapmap]
rs10840344	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10840359	0.86[EUR][1000 genomes]
rs10840375	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10840377	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042571	0.81[CEU][hapmap]
rs11042579	0.95[CEU][hapmap]
rs11042593	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042595	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042601	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042609	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042618	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042623	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042627	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042683	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11600251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600489	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607682	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11607703	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12362060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12362938	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12364676	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12416695	0.85[EUR][1000 genomes]
rs12417184	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418212	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12418619	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12419923	0.95[CEU][hapmap]
rs12420122	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12420734	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12420950	0.81[EUR][1000 genomes]
rs12421096	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421179	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421200	0.95[CEU][hapmap]
rs12421931	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1372807	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1372808	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1372811	1.00[CHB][hapmap]
rs1442737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271847	0.95[CEU][hapmap]
rs17356792	0.95[CEU][hapmap]
rs17359113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822291	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1822292	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1822293	1.00[CHB][hapmap]
rs1867135	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2044142	1.00[YRI][hapmap]
rs2197171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2403229	0.85[CEU][hapmap]
rs2403292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731164	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34683105	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4271380	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4281477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4385889	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4478985	0.84[EUR][1000 genomes]
rs4519084	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4529876	0.85[EUR][1000 genomes]
rs4576815	0.85[CEU][hapmap]
rs4625455	0.91[CEU][hapmap]
rs4643073	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4910086	0.85[CEU][hapmap]
rs4910095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4910098	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910111	1.00[CHB][hapmap]
rs55788918	0.91[EUR][1000 genomes]
rs55796222	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56853694	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877048	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61877049	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61878582	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878587	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878622	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61878636	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61889838	0.86[EUR][1000 genomes]
rs7104093	1.00[CEU][hapmap]
rs7110151	1.00[CHB][hapmap]
rs7114303	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7123453	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7123820	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7124401	1.00[CHB][hapmap]
rs7131445	0.95[CEU][hapmap]
rs7924875	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928959	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7931804	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7935774	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7935934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938502	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7938647	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7938788	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7945980	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946995	0.85[EUR][1000 genomes]
rs7947306	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948215	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7950447	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10180200-10186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10182000-10186600	Enhancers	NHDF-Ad	bronchial
7	chr11:10182000-10187400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:10182200-10185800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10183000-10186000	Weak transcription	Hela-S3	cervix
10	chr11:10183000-10186200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:10183000-10186800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:10183200-10185400	Weak transcription	NHEK	skin
13	chr11:10183200-10186400	Weak transcription	A549	lung
14	chr11:10183600-10185400	Weak transcription	Ovary	ovary
15	chr11:10183600-10185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:10183600-10185800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10183600-10186800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10183800-10185400	Weak transcription	Osteobl	bone
19	chr11:10183800-10186800	Weak transcription	Right Ventricle	heart
20	chr11:10184400-10186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:10184600-10186200	Weak transcription	Fetal Heart	heart
22	chr11:10184600-10192000	Weak transcription	Fetal Intestine Small	intestine
23	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:10185000-10186200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:10185000-10186400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:10185000-10186400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:10185200-10186800	Weak transcription	Fetal Lung	lung

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