Variant report

Variant	rs7938788
Chromosome Location	chr11:10132712-10132713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10458929	0.92[ASN][1000 genomes]
rs10500715	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10500717	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10743129	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10770079	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10770092	0.91[ASN][1000 genomes]
rs10840327	0.82[CEU][hapmap]
rs10840330	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10840333	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10840334	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10840337	0.82[CEU][hapmap]
rs10840338	0.87[CEU][hapmap]
rs10840347	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10840348	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10840352	0.87[ASN][1000 genomes]
rs10840359	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840361	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10840362	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10840370	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10840377	0.91[CEU][hapmap]
rs11042559	0.83[CEU][hapmap]
rs11042561	0.86[CEU][hapmap]
rs11042574	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11042579	0.87[CEU][hapmap]
rs11042589	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11042590	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11042591	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11042593	0.84[EUR][1000 genomes]
rs11042595	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11042601	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs11042604	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11042605	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11042606	0.91[ASN][1000 genomes]
rs11042609	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs11042610	0.92[ASN][1000 genomes]
rs11042613	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11042615	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs11042618	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs11042623	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs11042624	0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11042627	0.84[EUR][1000 genomes]
rs11042630	0.84[ASN][1000 genomes]
rs11042632	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs11042634	0.93[ASN][1000 genomes]
rs11042635	0.95[ASN][1000 genomes]
rs11042639	0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042641	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs11042645	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11042647	0.80[ASN][1000 genomes]
rs11042669	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs11530489	0.96[ASN][1000 genomes]
rs11600251	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs11600489	0.87[EUR][1000 genomes]
rs11602515	0.83[CEU][hapmap]
rs11606561	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs11607682	0.90[EUR][1000 genomes]
rs11607703	0.90[EUR][1000 genomes]
rs12222953	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12283105	1.00[JPT][hapmap]
rs12360783	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs12362060	0.87[CEU][hapmap]
rs12362938	0.88[EUR][1000 genomes]
rs12364676	0.84[EUR][1000 genomes]
rs12417184	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs12418212	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs12418619	0.90[EUR][1000 genomes]
rs12419923	0.87[CEU][hapmap]
rs12420734	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs12421096	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs12421179	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs12421200	0.87[CEU][hapmap]
rs12421931	0.91[EUR][1000 genomes]
rs12575719	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1372807	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1442732	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1442737	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs16907368	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16907396	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs17271847	0.87[CEU][hapmap]
rs17356792	0.87[CEU][hapmap]
rs17359113	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1822292	0.86[CEU][hapmap]
rs2197171	0.91[CEU][hapmap]
rs2403226	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2403227	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2403229	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2403292	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs28731164	0.90[EUR][1000 genomes]
rs34683105	0.81[EUR][1000 genomes]
rs4281477	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4478985	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4529876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4576815	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4625455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4909915	0.83[CEU][hapmap]
rs4909917	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4910081	0.82[CEU][hapmap]
rs4910086	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4910095	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4910118	0.82[JPT][hapmap]
rs56853694	0.84[EUR][1000 genomes]
rs59757006	0.92[ASN][1000 genomes]
rs61877048	0.85[EUR][1000 genomes]
rs61877049	0.85[EUR][1000 genomes]
rs61878582	0.89[EUR][1000 genomes]
rs61878587	0.91[EUR][1000 genomes]
rs61878622	0.90[EUR][1000 genomes]
rs61878636	0.91[EUR][1000 genomes]
rs7106914	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7114303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7121617	0.89[ASN][1000 genomes]
rs7123453	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7123820	0.86[EUR][1000 genomes]
rs7131445	0.87[CEU][hapmap]
rs7924875	0.81[EUR][1000 genomes]
rs7928959	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7935934	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7938491	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7938502	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7938647	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7945980	0.81[EUR][1000 genomes]
rs7946995	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947306	0.88[EUR][1000 genomes]
rs7950447	0.91[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
3	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
5	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:10126200-10143000	Weak transcription	Ovary	ovary
10	chr11:10130400-10133000	Enhancers	NHLF	lung
11	chr11:10131200-10135600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10131200-10144200	Weak transcription	Psoas Muscle	Psoas
13	chr11:10131400-10133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:10131400-10133200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10131400-10134400	Enhancers	NHDF-Ad	bronchial
16	chr11:10131400-10139200	Weak transcription	HUVEC	blood vessel
17	chr11:10131400-10142800	Weak transcription	Fetal Brain Male	brain
18	chr11:10131600-10134600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:10131600-10139200	Weak transcription	HSMMtube	muscle
20	chr11:10131600-10139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:10131800-10136000	Weak transcription	Adipose Nuclei	Adipose
22	chr11:10131800-10136200	Weak transcription	A549	lung
23	chr11:10131800-10136400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10131800-10139000	Weak transcription	Fetal Lung	lung
25	chr11:10131800-10139000	Weak transcription	HSMM	muscle
26	chr11:10131800-10143600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:10132000-10136400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:10132200-10136400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:10132200-10143000	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:10132400-10135400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:10132400-10136200	Weak transcription	Osteobl	bone
32	chr11:10132400-10136400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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