Variant report

Variant	rs11530489
Chromosome Location	chr11:10121828-10121829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10458929	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10500717	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10743129	0.85[ASN][1000 genomes]
rs10770092	0.87[ASN][1000 genomes]
rs10840347	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840348	0.91[ASN][1000 genomes]
rs10840352	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840359	0.93[ASN][1000 genomes]
rs10840361	0.95[ASN][1000 genomes]
rs10840362	0.88[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840370	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11042590	0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042591	0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042604	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042605	0.96[ASN][1000 genomes]
rs11042606	0.95[ASN][1000 genomes]
rs11042610	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11042613	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042619	0.86[YRI][hapmap]
rs11042624	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11042630	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11042631	0.81[YRI][hapmap]
rs11042634	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11042635	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11042639	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11042645	0.81[ASN][1000 genomes]
rs11042647	0.82[ASN][1000 genomes]
rs12283105	0.85[YRI][hapmap]
rs12575719	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1442732	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2403227	0.87[YRI][hapmap]
rs2403229	0.86[YRI][hapmap]
rs4478985	0.93[ASN][1000 genomes]
rs4529876	0.90[ASN][1000 genomes]
rs4576815	0.93[YRI][hapmap]
rs4625455	0.88[YRI][hapmap]
rs59757006	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7114303	0.93[ASN][1000 genomes]
rs7121617	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7938788	0.96[ASN][1000 genomes]
rs7946995	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10110400-10122200	Weak transcription	HSMM	muscle
2	chr11:10112400-10122000	Weak transcription	NHLF	lung
3	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:10116800-10125400	Weak transcription	Ovary	ovary
5	chr11:10116800-10131000	Weak transcription	Gastric	stomach
6	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea
11	chr11:10119400-10122400	ZNF genes & repeats	Fetal Lung	lung
12	chr11:10119800-10125200	Weak transcription	Aorta	Aorta
13	chr11:10120000-10122800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10120600-10123400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:10120600-10129200	Weak transcription	Psoas Muscle	Psoas
17	chr11:10120800-10123400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:10120800-10131000	Weak transcription	A549	lung
19	chr11:10121000-10129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:10121200-10122400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:10121200-10123600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:10121200-10130400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:10121400-10126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:10121400-10131200	Weak transcription	Liver	Liver
25	chr11:10121600-10122200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
26	chr11:10121800-10122000	ZNF genes & repeats	Colonic Mucosa	Colon
27	chr11:10121800-10122000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr11:10121800-10122200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
29	chr11:10121800-10122200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:10121800-10122200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
31	chr11:10121800-10122200	ZNF genes & repeats	Left Ventricle	heart
32	chr11:10121800-10122200	ZNF genes & repeats	Right Atrium	heart
33	chr11:10121800-10122200	ZNF genes & repeats	Dnd41	blood
34	chr11:10121800-10122400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:10121800-10122400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:10121800-10122400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:10121800-10122400	ZNF genes & repeats	Fetal Brain Female	brain
38	chr11:10121800-10122600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr11:10121800-10122600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:10121800-10122600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:10121800-10122800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:10121800-10122800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr11:10121800-10122800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:10121800-10122800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:10121800-10122800	ZNF genes & repeats	Fetal Stomach	stomach
46	chr11:10121800-10123000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr11:10121800-10123000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:10121800-10123000	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr11:10121800-10123000	ZNF genes & repeats	Placenta	Placenta
50	chr11:10121800-10123200	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links