Variant report

Variant	rs12283105
Chromosome Location	chr11:9999434-9999435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10500715	1.00[JPT][hapmap]
rs10500717	0.94[JPT][hapmap]
rs10770079	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840330	1.00[JPT][hapmap]
rs10840333	1.00[JPT][hapmap]
rs10840334	1.00[JPT][hapmap]
rs10840347	1.00[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs10840348	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10840352	0.81[AMR][1000 genomes]
rs10840361	1.00[JPT][hapmap]
rs10840362	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10840370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11042544	0.83[YRI][hapmap]
rs11042558	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs11042565	0.90[YRI][hapmap]
rs11042574	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11042587	0.83[YRI][hapmap]
rs11042589	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11042590	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11042591	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes]
rs11042597	0.83[YRI][hapmap]
rs11042604	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11042605	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11042613	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11042619	0.82[YRI][hapmap]
rs11042624	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11042631	0.83[YRI][hapmap]
rs11042639	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11042645	1.00[JPT][hapmap]
rs11526057	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11530489	0.85[YRI][hapmap]
rs12222953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs12270444	0.83[YRI][hapmap]
rs12275641	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs12279495	0.91[YRI][hapmap]
rs12281072	0.91[YRI][hapmap]
rs12295264	0.83[YRI][hapmap]
rs12575719	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13377561	0.82[YRI][hapmap]
rs1372807	0.94[JPT][hapmap]
rs1442732	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16907368	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs16907396	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs2403226	1.00[JPT][hapmap]
rs2403227	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2403229	0.88[JPT][hapmap];0.91[YRI][hapmap]
rs4576815	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4625455	1.00[JPT][hapmap]
rs4909917	1.00[JPT][hapmap]
rs4910086	1.00[JPT][hapmap]
rs57420335	0.81[AMR][1000 genomes]
rs58084362	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60362241	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7106914	1.00[JPT][hapmap]
rs7114303	1.00[JPT][hapmap]
rs7938788	1.00[JPT][hapmap]
rs7946995	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
5	chr11:9981400-10002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:9981400-10003400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:9981400-10003400	Weak transcription	NHEK	skin
8	chr11:9981400-10003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
10	chr11:9981400-10004200	Weak transcription	Lung	lung
11	chr11:9981400-10004400	Weak transcription	HepG2	liver
12	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
13	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:9981400-10014800	Weak transcription	Dnd41	blood
15	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
17	chr11:9981600-10003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:9981800-10003400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:9981800-10004800	Weak transcription	Ovary	ovary
20	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
21	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
23	chr11:9985800-10000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:9985800-10004000	Weak transcription	Placenta	Placenta
25	chr11:9985800-10004200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
29	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
30	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:9987200-10003600	Weak transcription	Hela-S3	cervix
32	chr11:9987600-10002600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:9989400-10004000	Weak transcription	Fetal Stomach	stomach
34	chr11:9990000-10002600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:9990000-10012600	Weak transcription	Liver	Liver
37	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
40	chr11:9990600-10003800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:9995000-10003600	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:9995400-10004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:9996000-10004200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:9996200-10002400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:9997600-10000400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:9998200-10000200	Weak transcription	Fetal Intestine Small	intestine

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