Variant report

Variant	rs10840362
Chromosome Location	chr11:10113835-10113836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10458929	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500715	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10500717	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10743129	0.82[ASN][1000 genomes]
rs10770079	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10770092	0.84[ASN][1000 genomes]
rs10840330	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10840333	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10840334	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10840347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840348	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10840352	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840359	0.96[ASN][1000 genomes]
rs10840361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10840370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042558	1.00[CEU][hapmap]
rs11042574	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11042589	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042590	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042591	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11042606	0.96[ASN][1000 genomes]
rs11042610	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11042613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11042630	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11042634	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11042635	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11042639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11042645	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042669	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11530489	0.88[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12222953	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12283105	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12575719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1372807	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1442732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16907368	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16907396	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2403226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2403227	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2403229	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs4478985	0.96[ASN][1000 genomes]
rs4529876	0.87[ASN][1000 genomes]
rs4576815	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4625455	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4909917	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs4910086	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs59757006	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7106914	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7114303	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7121617	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7938788	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7946995	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10109600-10117000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:10110400-10116200	Weak transcription	Ovary	ovary
4	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:10110400-10122200	Weak transcription	HSMM	muscle
6	chr11:10112000-10119200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:10112400-10114400	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:10112400-10114800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:10112400-10122000	Weak transcription	NHLF	lung
10	chr11:10112800-10114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:10113000-10114000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:10113000-10114600	Enhancers	Dnd41	blood
13	chr11:10113200-10114000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:10113200-10119200	Weak transcription	Fetal Brain Male	brain
15	chr11:10113400-10114000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:10113400-10118600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:10113400-10119400	Weak transcription	Fetal Lung	lung
18	chr11:10113800-10114000	Enhancers	Primary T cells from cord blood	blood
19	chr11:10113800-10118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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