Variant report

Variant	rs11042669
Chromosome Location	chr11:10235812-10235813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10500717	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs10840347	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs10840348	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs10840361	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs10840362	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10840370	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs11042589	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs11042590	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11042591	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs11042592	1.00[EUR][1000 genomes]
rs11042604	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs11042605	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs11042606	1.00[EUR][1000 genomes]
rs11042610	1.00[EUR][1000 genomes]
rs11042613	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs11042624	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042630	1.00[EUR][1000 genomes]
rs11042634	1.00[EUR][1000 genomes]
rs11042635	1.00[EUR][1000 genomes]
rs11042639	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs11042645	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042647	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11530492	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12221716	0.90[EUR][1000 genomes]
rs12575719	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs1372807	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1442732	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs16907396	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs2923126	1.00[CEU][hapmap]
rs4625455	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4910118	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs59757006	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114303	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs7121617	0.83[EUR][1000 genomes]
rs7938788	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs7946995	0.84[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10227400-10240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:10227600-10240200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:10227800-10239800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10227800-10240000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:10227800-10242600	Weak transcription	Esophagus	oesophagus
7	chr11:10229600-10240200	Weak transcription	Fetal Stomach	stomach
8	chr11:10230200-10240000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:10230200-10240000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:10230200-10240200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:10230200-10240600	Weak transcription	A549	lung
12	chr11:10230400-10236400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:10230600-10246800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10231000-10240000	Weak transcription	Dnd41	blood
15	chr11:10231000-10240200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
17	chr11:10231000-10254400	Weak transcription	NHLF	lung
18	chr11:10231200-10240000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:10231400-10240200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:10231800-10237000	Weak transcription	Ovary	ovary
21	chr11:10231800-10240400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10235200-10237800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:10235400-10236000	Enhancers	HepG2	liver
24	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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