Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10840348	1.00[EUR][1000 genomes]
rs10840370	0.81[AMR][1000 genomes]
rs11042589	0.90[EUR][1000 genomes]
rs11042592	1.00[EUR][1000 genomes]
rs11042605	1.00[EUR][1000 genomes]
rs11042606	1.00[EUR][1000 genomes]
rs11042610	1.00[EUR][1000 genomes]
rs11042624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042630	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042634	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042635	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042639	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042645	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042647	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11042669	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12221716	0.90[EUR][1000 genomes]
rs12575719	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1442732	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907368	0.90[EUR][1000 genomes]
rs16907396	1.00[EUR][1000 genomes]
rs4910118	0.83[EUR][1000 genomes]
rs57420335	0.90[EUR][1000 genomes]
rs59757006	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121617	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: