Variant report

Variant	rs10840361
Chromosome Location	chr11:10106833-10106834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10458929	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10500715	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10500717	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10770079	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10770092	0.82[ASN][1000 genomes]
rs10840330	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10840333	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10840334	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs10840347	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10840348	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10840352	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10840359	0.96[ASN][1000 genomes]
rs10840362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10840370	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042574	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11042589	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042590	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042591	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11042605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11042606	0.96[ASN][1000 genomes]
rs11042610	0.99[ASN][1000 genomes]
rs11042613	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11042616	0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs11042624	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11042630	0.81[ASN][1000 genomes]
rs11042634	0.90[ASN][1000 genomes]
rs11042635	0.92[ASN][1000 genomes]
rs11042639	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11042645	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11042669	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs11530489	0.95[ASN][1000 genomes]
rs12222953	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12283105	1.00[JPT][hapmap]
rs12575719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1372807	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1442732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16907368	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16907396	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2403226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2403227	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2403229	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs4478985	0.96[ASN][1000 genomes]
rs4529876	0.85[ASN][1000 genomes]
rs4576815	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4625455	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs4909917	0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4910086	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs59757006	0.89[ASN][1000 genomes]
rs7106914	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7114303	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7121617	0.86[ASN][1000 genomes]
rs7938788	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7946995	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10108400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10101800-10108400	Weak transcription	Ovary	ovary
4	chr11:10105600-10108400	Weak transcription	HUVEC	blood vessel
5	chr11:10105600-10108600	Weak transcription	Left Ventricle	heart
6	chr11:10106200-10108000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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