Variant report

Variant	rs10458929
Chromosome Location	chr11:10099110-10099111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9779389..9780344-chr11:10098256..10099114,2	K562	blood:

Variant related genes	Relation type
ENSG00000246273	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10500717	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10743129	0.81[ASN][1000 genomes]
rs10770092	0.83[ASN][1000 genomes]
rs10840347	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840348	0.95[ASN][1000 genomes]
rs10840352	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840359	0.97[ASN][1000 genomes]
rs10840361	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10840362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840370	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042589	0.81[ASN][1000 genomes]
rs11042590	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042591	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042592	0.81[ASN][1000 genomes]
rs11042604	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042605	1.00[ASN][1000 genomes]
rs11042606	0.97[ASN][1000 genomes]
rs11042610	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042613	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042616	0.82[AFR][1000 genomes]
rs11042624	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11042630	0.82[ASN][1000 genomes]
rs11042634	0.91[ASN][1000 genomes]
rs11042635	0.93[ASN][1000 genomes]
rs11042639	0.82[ASN][1000 genomes]
rs11530489	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12221716	0.81[ASN][1000 genomes]
rs12575719	0.85[ASN][1000 genomes]
rs1442732	0.92[ASN][1000 genomes]
rs16907396	0.81[ASN][1000 genomes]
rs4478985	0.97[ASN][1000 genomes]
rs4529876	0.86[ASN][1000 genomes]
rs57420335	0.81[ASN][1000 genomes]
rs59757006	0.90[ASN][1000 genomes]
rs7114303	0.97[ASN][1000 genomes]
rs7121617	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7938788	0.92[ASN][1000 genomes]
rs7946995	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10096800-10100400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:10098200-10102600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10098600-10099200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:10098600-10099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:10098600-10100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10098600-10100400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:10098600-10101400	Weak transcription	Psoas Muscle	Psoas
9	chr11:10098600-10105400	Weak transcription	Left Ventricle	heart
10	chr11:10098600-10108400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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