Variant report

Variant	rs11526057
Chromosome Location	chr11:10007445-10007446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10770079	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10840348	0.88[AMR][1000 genomes]
rs11042558	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042574	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042589	0.91[ASN][1000 genomes]
rs11042590	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11042591	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11042592	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11042605	0.84[AMR][1000 genomes]
rs11042606	0.82[AMR][1000 genomes]
rs12221716	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12222953	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12283105	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16907368	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16907396	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57420335	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58084362	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60362241	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
5	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:9981400-10014800	Weak transcription	Dnd41	blood
7	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
9	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
11	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
14	chr11:9990000-10012600	Weak transcription	Liver	Liver
15	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
17	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:9999600-10010200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:9999800-10009800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
27	chr11:10002800-10016000	Weak transcription	Colonic Mucosa	Colon
28	chr11:10003800-10014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:10004000-10020000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
31	chr11:10004400-10008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:10004400-10008800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:10004400-10008800	Weak transcription	HSMMtube	muscle
34	chr11:10004400-10020200	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:10004400-10021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:10004400-10024200	Weak transcription	NHLF	lung
37	chr11:10004600-10008200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:10004600-10008600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:10004600-10010600	Weak transcription	NHDF-Ad	bronchial
40	chr11:10004600-10021800	Weak transcription	Esophagus	oesophagus
41	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
42	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:10004800-10011000	Strong transcription	Fetal Lung	lung
44	chr11:10004800-10021800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:10004800-10023000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
47	chr11:10004800-10023800	Weak transcription	Osteobl	bone
48	chr11:10004800-10024800	Weak transcription	HSMM	muscle
49	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:10005200-10010200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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