Variant report

Variant	rs10840377
Chromosome Location	chr11:10256630-10256631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10254716..10258095-chr11:10261173..10265097,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10160763	0.84[ASN][1000 genomes]
rs10770103	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10840375	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11042595	1.00[CEU][hapmap]
rs11042601	1.00[CEU][hapmap]
rs11042609	1.00[CEU][hapmap]
rs11042615	1.00[CEU][hapmap]
rs11042618	1.00[CEU][hapmap]
rs11042623	1.00[CEU][hapmap]
rs11042632	1.00[CEU][hapmap]
rs11042641	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11042683	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114426	0.92[ASN][1000 genomes]
rs11600251	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11600489	0.83[EUR][1000 genomes]
rs11606561	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12360783	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12362060	0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362938	0.81[EUR][1000 genomes]
rs12416695	0.90[EUR][1000 genomes]
rs12417184	0.89[CEU][hapmap]
rs12418212	1.00[CEU][hapmap]
rs12420122	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420734	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12421096	1.00[CEU][hapmap]
rs12421179	0.90[CEU][hapmap]
rs1372807	0.91[CEU][hapmap]
rs1372808	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1372811	0.92[ASN][1000 genomes]
rs1442737	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17359113	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1822291	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822292	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1822293	0.92[ASN][1000 genomes]
rs1837978	0.92[ASN][1000 genomes]
rs1867135	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044142	0.85[AFR][1000 genomes]
rs2197171	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403291	0.92[ASN][1000 genomes]
rs2403292	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2957652	0.85[AFR][1000 genomes]
rs34596876	0.85[AFR][1000 genomes]
rs34683105	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35246982	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35269701	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35380986	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4271380	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4281477	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4385889	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519084	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625455	0.91[CEU][hapmap]
rs4643073	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910095	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4910098	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910101	0.92[ASN][1000 genomes]
rs4910102	0.92[ASN][1000 genomes]
rs4910110	0.84[ASN][1000 genomes]
rs4910111	0.84[ASN][1000 genomes]
rs55788918	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55796222	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56853694	0.84[EUR][1000 genomes]
rs61878582	0.80[EUR][1000 genomes]
rs61889838	0.89[EUR][1000 genomes]
rs7104093	1.00[CEU][hapmap]
rs7110151	0.84[ASN][1000 genomes]
rs7114303	0.91[CEU][hapmap]
rs7123453	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7124401	0.84[ASN][1000 genomes]
rs7924875	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7928959	1.00[CEU][hapmap]
rs7935774	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935934	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7938491	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7938647	1.00[CEU][hapmap]
rs7938788	0.91[CEU][hapmap]
rs7945980	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7947306	0.81[EUR][1000 genomes]
rs7948215	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950447	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:10247800-10259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10252200-10264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:10253000-10268200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:10253800-10256800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:10254000-10258800	Weak transcription	Left Ventricle	heart
8	chr11:10254000-10259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:10254000-10263400	Weak transcription	Ovary	ovary
10	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:10254400-10256800	Enhancers	Hela-S3	cervix
12	chr11:10254400-10257400	Weak transcription	Fetal Stomach	stomach
13	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:10254600-10265800	Weak transcription	Fetal Lung	lung
15	chr11:10254600-10268800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:10254800-10256800	Enhancers	NHEK	skin
17	chr11:10255400-10258400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10255600-10258200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10255600-10258600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:10255600-10261600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:10255600-10261600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:10255600-10268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
27	chr11:10255800-10266200	Weak transcription	Osteobl	bone
28	chr11:10255800-10268400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:10255800-10277400	Weak transcription	HSMM	muscle
30	chr11:10256000-10261600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10256000-10265600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:10256000-10270800	Weak transcription	NH-A	brain
33	chr11:10256200-10262000	Weak transcription	NHDF-Ad	bronchial
34	chr11:10256400-10268400	Weak transcription	NHLF	lung
35	chr11:10256600-10257200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:10256600-10258800	Weak transcription	Right Ventricle	heart
37	chr11:10256600-10263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:10256600-10269600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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