Variant report

Variant	rs2957652
Chromosome Location	chr11:10287300-10287301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10840377	0.85[AFR][1000 genomes]
rs12362060	0.85[AFR][1000 genomes]
rs12420122	0.81[AFR][1000 genomes]
rs1470258	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.89[ASN][1000 genomes]
rs2044142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2403269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920148	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.89[ASN][1000 genomes]
rs2920153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	0.89[ASN][1000 genomes]
rs34596876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55796222	0.85[AFR][1000 genomes]
rs59060963	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.89[ASN][1000 genomes]
rs7935774	0.81[AFR][1000 genomes]
rs7948215	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
3	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10279800-10287800	Weak transcription	Left Ventricle	heart
8	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:10283600-10291000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10284000-10290400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:10285400-10289000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:10285600-10290200	Weak transcription	NHLF	lung
14	chr11:10285800-10288800	Weak transcription	HSMM	muscle
15	chr11:10285800-10289000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:10286000-10287600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:10286000-10289000	Weak transcription	A549	lung
18	chr11:10286000-10289000	Weak transcription	HSMMtube	muscle
19	chr11:10286000-10290000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10286000-10290600	Weak transcription	NH-A	brain
21	chr11:10286200-10287600	Weak transcription	Osteobl	bone
22	chr11:10286200-10287800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:10286200-10288200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:10286200-10289000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:10286200-10289200	Weak transcription	NHDF-Ad	bronchial
26	chr11:10287200-10287400	Enhancers	Ovary	ovary
27	chr11:10287200-10288000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:10287200-10288000	Enhancers	Right Atrium	heart
29	chr11:10287200-10288200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:10287200-10289200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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