Variant report

Variant	rs34596876
Chromosome Location	chr11:10279453-10279454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10840377	0.85[AFR][1000 genomes]
rs12362060	0.85[AFR][1000 genomes]
rs12420122	0.81[AFR][1000 genomes]
rs1470258	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.89[ASN][1000 genomes]
rs2044142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2403269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920148	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.89[ASN][1000 genomes]
rs2920153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	0.89[ASN][1000 genomes]
rs55796222	0.85[AFR][1000 genomes]
rs59060963	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.89[ASN][1000 genomes]
rs7935774	0.81[AFR][1000 genomes]
rs7948215	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10259200-10280200	Weak transcription	A549	lung
2	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10263800-10280200	Weak transcription	Ovary	ovary
4	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10273600-10280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:10277400-10279800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10277400-10281200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:10277600-10279800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10277600-10280800	Weak transcription	NHLF	lung
15	chr11:10277600-10283000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:10277600-10283000	Weak transcription	HUVEC	blood vessel
17	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
18	chr11:10278000-10282800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:10278000-10283200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:10278200-10283000	Weak transcription	HSMM	muscle
21	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:10278600-10280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:10278800-10279600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:10278800-10279800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr11:10278800-10283000	Weak transcription	Osteobl	bone
27	chr11:10279000-10280200	Weak transcription	HepG2	liver
28	chr11:10279000-10283000	Weak transcription	NHDF-Ad	bronchial
29	chr11:10279000-10283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:10279200-10279800	Enhancers	Left Ventricle	heart
32	chr11:10279200-10280400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:10279400-10280600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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