Variant report

Variant	rs59060963
Chromosome Location	chr11:10265710-10265711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10265565..10267259-chr11:10314808..10317263,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11042683	0.81[AFR][1000 genomes]
rs1372808	0.81[AFR][1000 genomes]
rs1470258	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.89[ASN][1000 genomes]
rs1822292	0.81[AFR][1000 genomes]
rs2044142	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2403269	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920148	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.89[ASN][1000 genomes]
rs2920153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957652	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	0.89[ASN][1000 genomes]
rs34596876	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34683105	0.81[AFR][1000 genomes]
rs4385889	0.81[AFR][1000 genomes]
rs4519084	0.81[AFR][1000 genomes]
rs6484142	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv8789	chr11:10263385-10275029	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10253000-10268200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:10254600-10265800	Weak transcription	Fetal Lung	lung
5	chr11:10254600-10268800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:10255600-10268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
11	chr11:10255800-10266200	Weak transcription	Osteobl	bone
12	chr11:10255800-10268400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:10255800-10277400	Weak transcription	HSMM	muscle
14	chr11:10256000-10270800	Weak transcription	NH-A	brain
15	chr11:10256400-10268400	Weak transcription	NHLF	lung
16	chr11:10256600-10269600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:10257800-10266400	Weak transcription	Fetal Stomach	stomach
18	chr11:10257800-10269000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:10258000-10266400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:10259000-10266400	Weak transcription	Right Ventricle	heart
21	chr11:10259000-10268400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10259200-10266400	Weak transcription	Aorta	Aorta
23	chr11:10259200-10280200	Weak transcription	A549	lung
24	chr11:10259400-10268200	Weak transcription	Lung	lung
25	chr11:10260000-10266400	Weak transcription	Gastric	stomach
26	chr11:10260000-10266400	Weak transcription	Left Ventricle	heart
27	chr11:10260000-10267800	Weak transcription	Esophagus	oesophagus
28	chr11:10260200-10266400	Weak transcription	Pancreas	Pancrea
29	chr11:10261800-10268600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:10262200-10267400	Weak transcription	Hela-S3	cervix
31	chr11:10262200-10268200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10262400-10271800	Weak transcription	NHDF-Ad	bronchial
33	chr11:10263600-10273400	Weak transcription	Spleen	Spleen
34	chr11:10263600-10280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:10263800-10280200	Weak transcription	Ovary	ovary
36	chr11:10264200-10267200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:10264400-10268600	Weak transcription	Adipose Nuclei	Adipose
38	chr11:10264600-10268400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:10264600-10277400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:10264600-10280400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:10265400-10265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:10265600-10265800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:10265600-10266000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
46	chr11:10265600-10266200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:10265600-10267200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links