Variant report

Variant	rs4910102
Chromosome Location	chr11:10243053-10243054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10242439..10244914-chr11:10314504..10317346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10160763	0.92[ASN][1000 genomes]
rs10770100	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10840377	0.92[ASN][1000 genomes]
rs11042682	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042683	0.92[ASN][1000 genomes]
rs11042685	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1114426	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607447	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12281432	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12362060	0.92[ASN][1000 genomes]
rs12420122	0.92[ASN][1000 genomes]
rs1372809	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1372811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822291	0.92[ASN][1000 genomes]
rs1822292	0.84[ASN][1000 genomes]
rs1822293	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837978	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867135	0.92[ASN][1000 genomes]
rs1988724	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2083714	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2197170	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2197171	0.92[ASN][1000 genomes]
rs2218305	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2403291	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35246982	0.83[ASN][1000 genomes]
rs35269701	0.92[ASN][1000 genomes]
rs35380986	0.83[ASN][1000 genomes]
rs4258371	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4385889	0.92[ASN][1000 genomes]
rs4430500	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4519084	0.92[ASN][1000 genomes]
rs4534577	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4550215	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4553358	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4612801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4643073	0.92[ASN][1000 genomes]
rs4909923	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4910100	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910101	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910104	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910109	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910110	0.92[ASN][1000 genomes]
rs4910111	0.92[ASN][1000 genomes]
rs55796222	0.92[ASN][1000 genomes]
rs7110151	0.92[ASN][1000 genomes]
rs7117478	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7124401	0.92[ASN][1000 genomes]
rs716804	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7935774	0.92[ASN][1000 genomes]
rs7937758	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7948215	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10230600-10246800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
3	chr11:10231000-10254400	Weak transcription	NHLF	lung
4	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:10237800-10243400	Weak transcription	HepG2	liver
6	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:10241800-10254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10242400-10253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:10242600-10243600	Enhancers	Primary B cells from cord blood	blood
13	chr11:10242600-10252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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