Variant report

Variant	rs35380986
Chromosome Location	chr11:10255112-10255113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10253231..10255912-chr11:10256898..10258938,2	K562	blood:
2	chr11:10254716..10258095-chr11:10261173..10265097,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10840377	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042683	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1114426	0.83[ASN][1000 genomes]
rs12362060	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420122	0.91[ASN][1000 genomes]
rs1372811	0.83[ASN][1000 genomes]
rs1822291	0.91[ASN][1000 genomes]
rs1822292	0.83[ASN][1000 genomes]
rs1822293	0.83[ASN][1000 genomes]
rs1837978	0.83[ASN][1000 genomes]
rs1867135	0.91[ASN][1000 genomes]
rs2197171	0.91[ASN][1000 genomes]
rs2403291	0.83[ASN][1000 genomes]
rs35246982	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35269701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4385889	0.91[ASN][1000 genomes]
rs4519084	0.91[ASN][1000 genomes]
rs4643073	0.91[ASN][1000 genomes]
rs4910101	0.83[ASN][1000 genomes]
rs4910102	0.83[ASN][1000 genomes]
rs55796222	0.91[ASN][1000 genomes]
rs7935774	0.91[ASN][1000 genomes]
rs7948215	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:10247800-10255200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:10247800-10259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:10252000-10255200	Weak transcription	Osteobl	bone
7	chr11:10252200-10264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:10253000-10268200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:10253800-10256600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr11:10253800-10256800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:10254000-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10254000-10255200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:10254000-10255600	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:10254000-10258800	Weak transcription	Left Ventricle	heart
15	chr11:10254000-10259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:10254000-10263400	Weak transcription	Ovary	ovary
17	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10254200-10256000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:10254400-10255200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:10254400-10255200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:10254400-10256200	Enhancers	NHDF-Ad	bronchial
22	chr11:10254400-10256400	Enhancers	NHLF	lung
23	chr11:10254400-10256800	Enhancers	Hela-S3	cervix
24	chr11:10254400-10257400	Weak transcription	Fetal Stomach	stomach
25	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:10254600-10256200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:10254600-10265800	Weak transcription	Fetal Lung	lung
28	chr11:10254600-10268800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:10254800-10255400	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:10254800-10255600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:10254800-10255600	Enhancers	HUVEC	blood vessel
32	chr11:10254800-10255800	Enhancers	HMEC	breast
33	chr11:10254800-10256800	Enhancers	NHEK	skin
34	chr11:10255000-10255400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:10255000-10255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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