Variant report

Variant	rs4534577
Chromosome Location	chr11:10249904-10249905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10770100	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042682	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042685	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1114426	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11607447	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12281432	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1372809	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1372811	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1442739	0.82[AFR][1000 genomes]
rs1470259	0.83[AFR][1000 genomes]
rs1470260	0.83[AFR][1000 genomes]
rs1822293	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1837978	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1988724	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2083714	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2197170	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218305	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2403291	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4258371	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4430500	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4550215	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4553358	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4612801	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4909923	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4910100	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910101	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4910102	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910104	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4910109	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4910110	0.83[AFR][1000 genomes]
rs4910111	0.83[AFR][1000 genomes]
rs4910112	0.84[AFR][1000 genomes]
rs4910114	0.84[AFR][1000 genomes]
rs4910116	0.84[AFR][1000 genomes]
rs55879783	0.84[AFR][1000 genomes]
rs56035322	0.84[AFR][1000 genomes]
rs56352102	0.84[AFR][1000 genomes]
rs57975523	0.84[AFR][1000 genomes]
rs59090117	0.84[AFR][1000 genomes]
rs59807815	0.83[AFR][1000 genomes]
rs61889814	0.83[AFR][1000 genomes]
rs7110151	0.83[AFR][1000 genomes]
rs7112413	0.84[AFR][1000 genomes]
rs7117478	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7124401	0.83[AFR][1000 genomes]
rs716804	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73419149	0.81[AFR][1000 genomes]
rs7937758	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7941511	0.82[AFR][1000 genomes]
rs7947059	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10231000-10254400	Weak transcription	NHDF-Ad	bronchial
2	chr11:10231000-10254400	Weak transcription	NHLF	lung
3	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10241000-10253600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:10241200-10252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10241200-10255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:10241800-10254800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:10242400-10253600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:10242600-10252800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:10247800-10254200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:10247800-10255200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:10247800-10259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10248000-10253400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links