Variant report

Variant	rs61891765
Chromosome Location	chr11:10339768-10339769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10324179..10326085-chr11:10337865..10340352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10770103	1.00[ASN][1000 genomes]
rs11042731	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599958	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603561	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12362938	1.00[ASN][1000 genomes]
rs12416695	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416875	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12418514	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420640	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044782	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167169	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345958	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4910098	1.00[ASN][1000 genomes]
rs55788918	1.00[ASN][1000 genomes]
rs55923001	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	1.00[ASN][1000 genomes]
rs61889838	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104093	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931804	1.00[ASN][1000 genomes]
rs7950447	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10330800-10344400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:10331000-10340000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:10331000-10340000	Weak transcription	Spleen	Spleen
4	chr11:10331400-10343800	Weak transcription	NHLF	lung
5	chr11:10331800-10344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10332400-10340000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:10332400-10340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10336400-10343400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:10336400-10344000	Weak transcription	Osteobl	bone
10	chr11:10336600-10340000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:10336600-10343200	Weak transcription	Stomach Mucosa	stomach
12	chr11:10337000-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10337800-10339800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:10337800-10342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10337800-10343400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:10338400-10339800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:10338400-10340000	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:10338400-10340200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:10338400-10340200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:10338400-10340400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:10338400-10340400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:10338400-10340400	Enhancers	Fetal Intestine Small	intestine
23	chr11:10338400-10341800	Enhancers	Adipose Nuclei	Adipose
24	chr11:10338400-10342000	Enhancers	Fetal Thymus	thymus
25	chr11:10338400-10346800	Enhancers	NHDF-Ad	bronchial
26	chr11:10338600-10339800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:10338600-10339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:10338600-10340200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:10338600-10340200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:10338600-10340200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:10338600-10340200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:10338600-10340200	Enhancers	Right Atrium	heart
33	chr11:10338600-10340400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:10338600-10340400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:10338600-10340400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:10338600-10340400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:10338600-10340400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:10338600-10340400	Enhancers	Fetal Intestine Large	intestine
39	chr11:10338600-10340400	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:10338600-10340600	Enhancers	Dnd41	blood
41	chr11:10338600-10340800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:10338600-10340800	Enhancers	Left Ventricle	heart
43	chr11:10338600-10340800	Enhancers	Small Intestine	intestine
44	chr11:10338600-10341000	Enhancers	Primary B cells from peripheral blood	blood
45	chr11:10338600-10341000	Enhancers	Ovary	ovary
46	chr11:10338600-10341400	Enhancers	Fetal Muscle Leg	muscle
47	chr11:10338600-10341600	Enhancers	Primary B cells from cord blood	blood
48	chr11:10338600-10341600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:10338600-10342200	Enhancers	HepG2	liver
50	chr11:10338600-10342400	Enhancers	Thymus	Thymus

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