Variant report

Variant	rs2167169
Chromosome Location	chr11:10368983-10368984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10770103	1.00[ASN][1000 genomes]
rs11042731	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599958	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603561	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12416695	1.00[ASN][1000 genomes]
rs12416875	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12418514	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345958	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4910098	1.00[ASN][1000 genomes]
rs55788918	1.00[ASN][1000 genomes]
rs55923001	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889838	1.00[ASN][1000 genomes]
rs61891765	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104093	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10367400-10372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10368200-10370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:10368400-10369800	Weak transcription	HSMM	muscle
5	chr11:10368800-10373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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