Variant report

Variant	rs11042731
Chromosome Location	chr11:10340423-10340424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10335615..10338185-chr11:10340007..10342257,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10770103	1.00[ASN][1000 genomes]
rs10840377	1.00[CEU][hapmap]
rs11042641	1.00[CEU][hapmap]
rs11599958	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600251	1.00[CEU][hapmap]
rs11603561	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11606561	1.00[CEU][hapmap]
rs12360783	1.00[CEU][hapmap]
rs12362060	0.94[CEU][hapmap]
rs12362938	1.00[ASN][1000 genomes]
rs12416695	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416875	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12418514	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420640	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442737	1.00[CEU][hapmap]
rs17359113	1.00[CEU][hapmap]
rs1822292	0.94[CEU][hapmap]
rs2044782	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167169	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197171	1.00[CEU][hapmap]
rs2403292	1.00[CEU][hapmap]
rs4281477	1.00[CEU][hapmap]
rs4345958	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450168	1.00[ASN][1000 genomes]
rs4910095	1.00[CEU][hapmap]
rs4910098	1.00[ASN][1000 genomes]
rs55788918	1.00[ASN][1000 genomes]
rs55923001	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878636	1.00[ASN][1000 genomes]
rs61889838	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891765	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104093	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123453	1.00[CEU][hapmap]
rs7931804	1.00[ASN][1000 genomes]
rs7935934	1.00[CEU][hapmap]
rs7938491	1.00[CEU][hapmap]
rs7950447	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10330800-10344400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:10331400-10343800	Weak transcription	NHLF	lung
3	chr11:10331800-10344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10336400-10343400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:10336400-10344000	Weak transcription	Osteobl	bone
6	chr11:10336600-10343200	Weak transcription	Stomach Mucosa	stomach
7	chr11:10337800-10342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:10337800-10343400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:10338400-10341800	Enhancers	Adipose Nuclei	Adipose
10	chr11:10338400-10342000	Enhancers	Fetal Thymus	thymus
11	chr11:10338400-10346800	Enhancers	NHDF-Ad	bronchial
12	chr11:10338600-10340600	Enhancers	Dnd41	blood
13	chr11:10338600-10340800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:10338600-10340800	Enhancers	Left Ventricle	heart
15	chr11:10338600-10340800	Enhancers	Small Intestine	intestine
16	chr11:10338600-10341000	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:10338600-10341000	Enhancers	Ovary	ovary
18	chr11:10338600-10341400	Enhancers	Fetal Muscle Leg	muscle
19	chr11:10338600-10341600	Enhancers	Primary B cells from cord blood	blood
20	chr11:10338600-10341600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:10338600-10342200	Enhancers	HepG2	liver
22	chr11:10338600-10342400	Enhancers	Thymus	Thymus
23	chr11:10338600-10343000	Enhancers	Stomach Smooth Muscle	stomach
24	chr11:10338800-10340800	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:10338800-10341200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:10338800-10344000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:10338800-10344000	Weak transcription	HUVEC	blood vessel
28	chr11:10339000-10340600	Enhancers	Right Ventricle	heart
29	chr11:10339000-10340800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:10339000-10341200	Weak transcription	Fetal Lung	lung
31	chr11:10339000-10344000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:10339200-10340600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr11:10339200-10340800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr11:10339200-10341000	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:10339200-10342800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:10339200-10344000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:10339200-10344400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:10339400-10344400	Weak transcription	Fetal Kidney	kidney
39	chr11:10339600-10340800	Weak transcription	Fetal Stomach	stomach
40	chr11:10339600-10342800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:10339600-10343400	Weak transcription	Placenta	Placenta
42	chr11:10339600-10344000	Weak transcription	Brain Anterior Caudate	brain
43	chr11:10339600-10344000	Weak transcription	Brain Substantia Nigra	brain
44	chr11:10339600-10348800	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:10339800-10340600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:10339800-10340800	Enhancers	A549	lung
47	chr11:10339800-10341200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:10340000-10340800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:10340000-10340800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:10340000-10341000	Enhancers	GM12878-XiMat	blood

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