Variant report

Variant	rs11042827
Chromosome Location	chr11:10494507-10494508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10493608..10495918-chr11:10496985..10499261,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11042817	0.93[ASN][1000 genomes]
rs11042828	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042829	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042831	0.89[EUR][1000 genomes]
rs11042832	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11042833	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11042842	0.92[EUR][1000 genomes]
rs12221503	0.92[EUR][1000 genomes]
rs16907858	0.92[EUR][1000 genomes]
rs2071019	0.91[ASN][1000 genomes]
rs3741043	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs930672	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
4	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
5	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:10481200-10494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:10483400-10500600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
11	chr11:10485000-10515200	Weak transcription	Liver	Liver
12	chr11:10485200-10501000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:10485400-10498600	Weak transcription	GM12878-XiMat	blood
14	chr11:10485600-10495800	Weak transcription	Spleen	Spleen
15	chr11:10485600-10496800	Weak transcription	NHLF	lung
16	chr11:10485600-10500400	Weak transcription	Adipose Nuclei	Adipose
17	chr11:10485600-10500800	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:10485600-10508200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:10485800-10495000	Weak transcription	Gastric	stomach
20	chr11:10485800-10495800	Weak transcription	Placenta	Placenta
21	chr11:10485800-10497200	Weak transcription	Lung	lung
22	chr11:10485800-10498400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:10485800-10511600	Weak transcription	Osteobl	bone
24	chr11:10486000-10504800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:10486200-10497000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:10486200-10501200	Weak transcription	NHEK	skin
27	chr11:10486400-10495800	Weak transcription	Brain Anterior Caudate	brain
28	chr11:10486600-10495200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:10486600-10498800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:10486600-10502600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:10486800-10495600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:10486800-10497200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:10487200-10495400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:10487200-10495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:10487200-10495800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:10487200-10496600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:10487200-10503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:10487200-10506200	Weak transcription	Dnd41	blood
41	chr11:10487400-10495000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:10487400-10495000	Weak transcription	K562	blood
43	chr11:10487400-10496800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:10487400-10500400	Weak transcription	Esophagus	oesophagus
45	chr11:10487600-10495000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:10487600-10495000	Weak transcription	Primary B cells from cord blood	blood
47	chr11:10487600-10496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:10488000-10494600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:10488000-10494800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:10488000-10495600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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