Variant report

Variant	rs11042832
Chromosome Location	chr11:10500661-10500662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10499830..10501916-chr11:10504695..10506474,2	MCF-7	breast:
2	chr11:10495930..10498423-chr11:10500094..10502413,3	K562	blood:
3	chr11:10500008..10502919-chr11:10521418..10523913,2	K562	blood:
4	chr11:10499489..10502562-chr11:10546012..10549335,3	K562	blood:
5	chr11:10500501..10502775-chr11:10545214..10548072,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11042827	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11042828	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11042829	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11042831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042833	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042842	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221503	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12295125	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16907858	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107588	1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv526453	chr11:10499103-10502422	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
3	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
4	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
8	chr11:10485000-10515200	Weak transcription	Liver	Liver
9	chr11:10485200-10501000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:10485600-10500800	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:10485600-10508200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:10485800-10511600	Weak transcription	Osteobl	bone
13	chr11:10486000-10504800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:10486200-10501200	Weak transcription	NHEK	skin
15	chr11:10486600-10502600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:10487200-10503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:10487200-10506200	Weak transcription	Dnd41	blood
20	chr11:10489000-10512600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:10494200-10510000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:10494600-10509600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr11:10495000-10509600	Strong transcription	Primary B cells from cord blood	blood
24	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:10495200-10510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
27	chr11:10495400-10509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:10495400-10511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:10495600-10510600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:10495600-10516400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:10496000-10503000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:10496200-10509800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:10496400-10505800	Weak transcription	Placenta	Placenta
35	chr11:10496400-10524000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr11:10496600-10505200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:10496600-10507200	Strong transcription	Fetal Thymus	thymus
38	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:10496800-10501400	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:10497200-10500800	Enhancers	Brain Substantia Nigra	brain
41	chr11:10497800-10503200	Enhancers	Brain Hippocampus Middle	brain
42	chr11:10497800-10503800	Enhancers	Brain Anterior Caudate	brain
43	chr11:10498400-10500800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:10498400-10508400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:10498600-10503400	Enhancers	Brain Angular Gyrus	brain
46	chr11:10498600-10511600	Weak transcription	Ovary	ovary
47	chr11:10498600-10514400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:10498800-10508600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:10498800-10522000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:10498800-10522200	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links